Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 2.2e-76 288.9 146 100.0
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 3.8e-68 261.5 148 90.5
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 6.1e-34 147.9 137 59.9
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 2.4e-30 136.0 76 85.5
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 2.3e-17 92.8 80 50.0
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 3.9e-17 92.0 84 54.8
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 6.7e-17 91.3 88 51.1
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 1.1e-16 90.5 85 50.6
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.5e-16 90.1 43 83.7
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 2.0e-16 89.7 75 54.7
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 2.0e-16 89.7 80 48.8
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 2.6e-16 89.4 72 56.9
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 3.3e-16 89.0 40 87.5
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 4.4e-16 88.6 76 59.2
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 4.4e-16 88.6 38 92.1
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 4.4e-16 88.6 79 57.0
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 5.7e-16 88.2 79 50.6
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 7.4e-16 87.8 101 47.5
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 9.7e-16 87.4 112 45.5
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 9.7e-16 87.4 86 53.5
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 9.7e-16 87.4 98 44.9
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 1.3e-15 87.0 67 61.2
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 1.3e-15 87.0 83 54.2
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 1.7e-15 86.7 96 46.9
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 1.7e-15 86.7 37 86.5
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 1.7e-15 86.7 36 94.4
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 2.2e-15 86.3 70 60.0
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 2.2e-15 86.3 36 91.7
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 2.8e-15 85.9 72 55.6
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 3.7e-15 85.5 72 56.9
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 3.7e-15 85.5 72 56.9
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 3.7e-15 85.5 74 56.8
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 3.7e-15 85.5 64 60.9
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 4.8e-15 85.1 38 86.8
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 4.8e-15 85.1 38 86.8
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 4.8e-15 85.1 38 86.8
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 6.3e-15 84.7 130 40.0
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 6.3e-15 84.7 45 71.1
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 8.2e-15 84.3 35 94.3
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 1.1e-14 84.0 72 56.9
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 1.1e-14 84.0 72 56.9
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 1.1e-14 84.0 37 86.5
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 1.1e-14 84.0 145 37.9
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 1.4e-14 83.6 38 84.2
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 1.8e-14 83.2 39 82.1
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 1.8e-14 83.2 33 97.0
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 1.8e-14 83.2 82 50.0
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.4e-14 82.8 87 50.6
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 2.4e-14 82.8 45 68.9
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 3.1e-14 82.4 36 86.1
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 5.3e-14 81.6 76 57.9
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 5.3e-14 81.6 37 81.1
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 5.3e-14 81.6 82 50.0
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 5.3e-14 81.6 128 38.3
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 5.3e-14 81.6 39 82.1
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 7.0e-14 81.3 83 47.0
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 7.0e-14 81.3 72 52.8
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 9.1e-14 80.9 72 55.6
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 2.0e-13 79.7 37 78.4
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 2.0e-13 79.7 88 56.8
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 3.5e-13 79.0 37 81.1
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 4.5e-13 78.6 36 80.6
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 5.9e-13 78.2 72 54.2
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 7.7e-13 77.8 39 76.9
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 7.7e-13 77.8 39 79.5
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 7.7e-13 77.8 97 46.4
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 7.7e-13 77.8 39 82.1
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.0e-12 77.4 124 38.7
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 1.0e-12 77.4 31 96.8
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 1.3e-12 77.0 78 47.4
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 1.7e-12 76.6 32 90.6
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 2.2e-12 76.3 36 80.6
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 2.9e-12 75.9 37 78.4
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 6.5e-12 74.7 67 58.2
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 6.5e-12 74.7 95 46.3
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 8.5e-12 74.3 67 58.2
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 8.5e-12 74.3 67 58.2
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 1.1e-11 73.9 29 96.6
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 1.1e-11 73.9 42 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.5e-11 73.6 119 38.7
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 1.9e-11 73.2 31 93.5
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 1.9e-11 73.2 88 51.1
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.9e-11 73.2 114 36.8
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 2.5e-11 72.8 90 50.0
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 3.2e-11 72.4 63 68.3
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 3.2e-11 72.4 39 69.2
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 3.2e-11 72.4 32 81.2
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 3.2e-11 72.4 114 36.8
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 4.2e-11 72.0 70 48.6
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 7.2e-11 71.2 31 90.3
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 9.4e-11 70.9 125 38.4
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 1.2e-10 70.5 31 87.1
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 1.2e-10 70.5 31 87.1
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 2.1e-10 69.7 29 89.7
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 2.1e-10 69.7 30 90.0
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 3.6e-10 68.9 33 75.8
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 6.1e-10 68.2 30 80.0
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 6.1e-10 68.2 86 47.7
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 8.0e-10 67.8 36 75.0
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 1.4e-09 67.0 40 60.0
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 1.8e-09 66.6 109 40.4
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 1.8e-09 66.6 27 88.9
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 3.0e-09 65.9 29 79.3
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 2.6e-08 62.8 34 70.6
AL6G28340 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 5.3e-06 55.1 34 61.8


User provided reference genes

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