Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046480 Cucumis sativus L. HOM05D001749 ORTHO05D001632 4.5e-124 448.0 234 100.0
MELO3C007844.2 Cucumis melo HOM05D001749 ORTHO05D001632 7.8e-108 394.0 234 88.9
ClCG01G019770 Citrullus lanatus HOM05D001749 ORTHO05D001632 1.7e-91 339.7 234 77.8
Sed0010817 Sechium edule HOM05D001749 ORTHO05D001632 8.1e-65 251.1 234 62.0
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 3.7e-25 119.4 229 35.4
Prupe.7G158300 Prunus persica HOM05D001749 ORTHO05D001632 3.7e-25 119.4 245 34.3
Haze_15059 Corylus avellana HOM05D001749 ORTHO05D001632 1.1e-24 117.9 229 35.4
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.1e-24 115.9 246 36.2
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 9.1e-24 114.8 247 34.0
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.2e-23 114.4 252 35.7
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 3.5e-23 112.8 255 33.3
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.5e-23 112.5 252 35.7
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 2.9e-22 109.8 255 34.9
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.8e-22 109.4 260 37.3
MELO3C016396.2 Cucumis melo HOM05D001749 ORTHO05D001632 5.0e-22 109.0 236 36.4
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 5.0e-22 109.0 250 36.4
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.9e-21 107.1 257 36.6
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 2.5e-21 106.7 258 34.9
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.2e-21 106.3 250 36.0
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 5.5e-21 105.5 235 33.2
CiPaw.02G020500 Carya illinoinensis HOM05D001749 ORTHO05D001632 5.5e-21 105.5 229 32.3
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 5.5e-21 105.5 263 33.8
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 7.2e-21 105.1 250 33.6
ClCG07G008620 Citrullus lanatus HOM05D001749 ORTHO05D001632 9.4e-21 104.8 233 34.8
CsaV3_4G005530 Cucumis sativus L. HOM05D001749 ORTHO05D001632 9.4e-21 104.8 236 35.2
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.6e-20 104.0 244 34.0
CiPaw.01G045700 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.1e-20 103.6 232 33.6
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 3.6e-20 102.8 253 30.0
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 3.6e-20 102.8 239 36.0
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 8.0e-20 101.7 237 32.5
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 8.0e-20 101.7 257 34.6
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 1.0e-19 101.3 243 32.1
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.0e-19 101.3 232 31.9
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 1.0e-19 101.3 232 31.9
Gohir.A10G096200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.8e-19 100.5 245 35.5
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 3.0e-19 99.8 244 33.2
Potri.007G021500 Populus trichocarpa HOM05D001749 ORTHO05D001632 3.0e-19 99.8 264 30.3
QL06p047145 Quercus lobata HOM05D001749 ORTHO05D001632 3.0e-19 99.8 222 32.4
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 8.8e-19 98.2 260 31.5
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.2e-18 97.8 251 35.5
TWI73G0715 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 2.6e-18 96.7 250 31.2
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 5.7e-18 95.5 253 32.4
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 7.5e-18 95.1 244 28.7
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 7.5e-18 95.1 247 32.4
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.3e-17 94.4 244 28.3
CANSAT01G2116 Cannabis sativa HOM05D001749 ORTHO05D001632 1.7e-17 94.0 233 31.3
PGR119G0350 Punica granatum HOM05D001749 ORTHO05D001632 2.2e-17 93.6 243 32.5
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 2.2e-17 93.6 246 30.1
Eucgr.I02410 Eucalyptus grandis HOM05D001749 ORTHO05D001632 4.8e-17 92.4 244 31.6
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 6.3e-17 92.0 259 30.1
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 1.1e-16 91.3 238 30.3
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.1e-16 91.3 233 30.9
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 3.1e-16 89.7 256 28.1
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 3.1e-16 89.7 241 30.3
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 3.1e-16 89.7 263 29.7
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 3.1e-16 89.7 263 29.7
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 5.4e-16 89.0 257 29.2
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 5.4e-16 89.0 257 29.2
C07p25470 Brassica napus HOM05D001749 ORTHO05D001632 7.0e-16 88.6 249 31.3
PGSC0003DMG400022575 Solanum tuberosum HOM05D001749 ORTHO05D001632 7.0e-16 88.6 240 30.4
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 7.0e-16 88.6 236 31.4
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 9.1e-16 88.2 253 28.9
Sopen02g029630 Solanum pennellii HOM05D001749 ORTHO05D001632 9.1e-16 88.2 247 29.1
Solyc03g033860.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.2e-15 87.8 236 32.2
DCAR_025960 Daucus carota HOM05D001749 ORTHO05D001632 1.6e-15 87.4 248 28.2
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 1.6e-15 87.4 247 30.0
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 2.0e-15 87.0 241 32.4
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 2.0e-15 87.0 260 31.2
BcaC06g34702 Brassica carinata HOM05D001749 ORTHO05D001632 2.7e-15 86.7 250 31.6
A07p17520 Brassica napus HOM05D001749 ORTHO05D001632 2.7e-15 86.7 245 30.2
BraA07t29472Z Brassica rapa HOM05D001749 ORTHO05D001632 2.7e-15 86.7 245 30.2
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 3.5e-15 86.3 247 30.8
Sabra07G0018500 Salix brachista HOM05D001749 ORTHO05D001632 3.5e-15 86.3 263 28.9
EL10As8g23912 Beta vulgaris HOM05D001749 ORTHO05D001632 7.7e-15 85.1 245 31.0
Sabra05G0099000 Salix brachista HOM05D001749 ORTHO05D001632 7.7e-15 85.1 262 29.0
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.3e-14 84.3 241 29.9
Actinidia19200 Actinidia chinensis HOM05D001749 ORTHO05D001632 1.7e-14 84.0 233 32.2
BolC7t43068H Brassica oleracea HOM05D001749 ORTHO05D001632 2.3e-14 83.6 250 30.8
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 3.8e-14 82.8 251 30.7
Sopen03g006620 Solanum pennellii HOM05D001749 ORTHO05D001632 5.0e-14 82.4 235 30.2
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 6.5e-14 82.0 239 31.4
Lj4g0011278 Lotus japonicus HOM05D001749 ORTHO05D001632 8.6e-14 81.6 255 32.2
Nitab4.5_0000344g0170 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.1e-13 81.3 245 28.2
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 1.1e-13 81.3 235 31.1
Sed0004351 Sechium edule HOM05D001749 ORTHO05D001632 1.5e-13 80.9 230 30.9
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 1.9e-13 80.5 255 27.1
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 3.2e-13 79.7 247 28.7
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 7.2e-13 78.6 255 29.4
Dinv13495 Davidia involucrata HOM05D001749 ORTHO05D001632 7.2e-13 78.6 204 31.4
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 9.5e-13 78.2 245 28.6
Nitab4.5_0011923g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 9.5e-13 78.2 242 29.3
BcaB02g10030 Brassica carinata HOM05D001749 ORTHO05D001632 1.2e-12 77.8 253 28.1
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 1.2e-12 77.8 238 27.3
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 1.2e-12 77.8 238 27.3
Ca_22298_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 1.2e-12 77.8 234 29.9
Ca_22328_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 1.2e-12 77.8 234 29.9
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 1.6e-12 77.4 238 27.3
TPR.G14237 Trifolium pratense HOM05D001749 ORTHO05D001632 2.1e-12 77.0 224 30.4
Medtr8g077085 Medicago truncatula HOM05D001749 ORTHO05D001632 2.8e-12 76.6 226 29.6
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 4.7e-12 75.9 264 28.4
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 4.7e-12 75.9 264 28.4
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 4.7e-12 75.9 246 26.8
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 4.7e-12 75.9 250 28.0
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 4.7e-12 75.9 265 28.7
Peaxi162Scf00010g00116 Petunia axillaris HOM05D001749 ORTHO05D001632 4.7e-12 75.9 215 31.2
Sc03g0003140 Simmondsia chinensis HOM05D001749 ORTHO05D001632 8.0e-12 75.1 233 30.0
Lalb_Chr16g0391051 Lupinus albus HOM05D001749 ORTHO05D001632 1.4e-11 74.3 229 27.1
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 1.8e-11 73.9 246 26.4
Glyma.02G054400 Glycine max HOM05D001749 ORTHO05D001632 1.8e-11 73.9 222 29.7
Migut.H02524 Erythranthe guttata HOM05D001749 ORTHO05D001632 2.3e-11 73.6 222 29.7
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 2.3e-11 73.6 258 27.5
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 2.3e-11 73.6 235 28.9
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 4.0e-11 72.8 271 26.9
ATR0568G223 Amborella trichopoda HOM05D001749 ORTHO05D001632 6.8e-11 72.0 253 28.9
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 6.8e-11 72.0 257 26.5
ECA232G4251 Erigeron canadensis HOM05D001749 ORTHO05D001632 6.8e-11 72.0 260 25.8
Lj2P456T45 Lonicera japonica HOM05D001749 ORTHO05D001632 6.8e-11 72.0 253 28.1
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 6.8e-11 72.0 241 28.2
Ah.03g141140 Amaranthus hybridus HOM05D001749 ORTHO05D001632 8.8e-11 71.6 230 24.8
Psat4g095000 Pisum sativum HOM05D001749 ORTHO05D001632 8.8e-11 71.6 225 29.8
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 8.8e-11 71.6 233 27.9
Sc16g0002570 Simmondsia chinensis HOM05D001749 ORTHO05D001632 8.8e-11 71.6 220 31.4
Lj4C36T10 Lonicera japonica HOM05D001749 ORTHO05D001632 2.0e-10 70.5 243 28.0
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 2.0e-10 70.5 244 27.9
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.0e-10 70.5 251 28.3
CDE02G3540 Ceratophyllum demersum HOM05D001749 ORTHO05D001632 3.4e-10 69.7 236 28.0
AUR62007601 Chenopodium quinoa HOM05D001749 ORTHO05D001632 7.5e-10 68.6 278 26.3
VMungo0251G1101 Vigna mungo HOM05D001749 ORTHO05D001632 7.5e-10 68.6 231 28.6
C09p11860 Brassica napus HOM05D001749 ORTHO05D001632 9.8e-10 68.2 241 24.9
AUR62004089 Chenopodium quinoa HOM05D001749 ORTHO05D001632 2.2e-09 67.0 259 26.6
CAN.G1226.48 Capsicum annuum HOM05D001749 ORTHO05D001632 2.8e-09 66.6 234 26.9
Glyma.16G134800 Glycine max HOM05D001749 ORTHO05D001632 2.8e-09 66.6 221 28.1
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 2.8e-09 66.6 237 26.6
A09p10000 Brassica napus HOM05D001749 ORTHO05D001632 3.7e-09 66.2 243 24.3
BraA09t36645Z Brassica rapa HOM05D001749 ORTHO05D001632 4.9e-09 65.9 243 24.3
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 4.9e-09 65.9 247 25.9
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 6.3e-09 65.5 254 29.5
Manes.04G074762 Manihot esculenta HOM05D001749 ORTHO05D001632 6.3e-09 65.5 236 29.2
Sopen04g034230 Solanum pennellii HOM05D001749 ORTHO05D001632 6.3e-09 65.5 239 28.5
CSS0005210 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 8.3e-09 65.1 235 30.2
FvH4_7g02350 Fragaria vesca HOM05D001749 ORTHO05D001632 8.3e-09 65.1 128 35.2
A03p48050 Brassica napus HOM05D001749 ORTHO05D001632 1.1e-08 64.7 254 26.8
BraA03t13912Z Brassica rapa HOM05D001749 ORTHO05D001632 1.1e-08 64.7 254 26.8
Solyc04g080640.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.1e-08 64.7 239 28.5
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 1.4e-08 64.3 238 29.4
Oeu023336.1 Olea europaea HOM05D001749 ORTHO05D001632 1.4e-08 64.3 240 25.8
Nitab4.5_0003265g0050 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.8e-08 63.9 245 29.0
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 1.8e-08 63.9 270 26.7
Actinidia22524 Actinidia chinensis HOM05D001749 ORTHO05D001632 3.1e-08 63.2 232 26.3
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 4.1e-08 62.8 238 29.0
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 4.1e-08 62.8 245 29.0
Phvul.003G255700 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 4.1e-08 62.8 232 26.3
SGA_v2.0_scaffold12G06315 Striga asiatica HOM05D001749 ORTHO05D001632 4.1e-08 62.8 221 29.9
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 5.4e-08 62.4 258 28.7
CDE06G1782 Ceratophyllum demersum HOM05D001749 ORTHO05D001632 7.0e-08 62.0 191 30.4
MD05G1064000 Malus domestica HOM05D001749 ORTHO05D001632 7.0e-08 62.0 231 26.8
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 9.2e-08 61.6 229 27.5
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 1.6e-07 60.8 224 28.1
Ah.05g177040 Amaranthus hybridus HOM05D001749 ORTHO05D001632 1.6e-07 60.8 246 28.5
HanXRQChr04g0103991 Helianthus annuus HOM05D001749 ORTHO05D001632 2.0e-07 60.5 234 27.4
Sabra04G0105300 Salix brachista HOM05D001749 ORTHO05D001632 2.0e-07 60.5 246 26.0
BolC8t50232H Brassica oleracea HOM05D001749 ORTHO05D001632 2.7e-07 60.1 263 26.6
MD10G1072700 Malus domestica HOM05D001749 ORTHO05D001632 4.5e-07 59.3 232 27.2
AL8G45100 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 5.9e-07 58.9 261 24.1
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 5.9e-07 58.9 256 28.1
AUR62014496 Chenopodium quinoa HOM05D001749 ORTHO05D001632 5.9e-07 58.9 240 28.3
ClCG11G004240 Citrullus lanatus HOM05D001749 ORTHO05D001632 7.8e-07 58.5 237 26.2
PSO675G0347 Papaver somniferum HOM05D001749 ORTHO05D001632 1.0e-06 58.2 262 24.8
FvH4_2g09200 Fragaria vesca HOM05D001749 ORTHO05D001632 1.7e-06 57.4 237 27.4
FAN15G1825 Fragaria x ananassa HOM05D001749 ORTHO05D001632 1.7e-06 57.4 237 27.4
Dinv39444 Davidia involucrata HOM05D001749 ORTHO05D001632 2.3e-06 57.0 232 25.9
FAN24G3069 Fragaria x ananassa HOM05D001749 ORTHO05D001632 2.3e-06 57.0 237 27.4
TWI79G0729 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 2.3e-06 57.0 214 24.3
HPP92_009680 Vanilla planifolia HOM05D001749 ORTHO05D001632 2.3e-06 57.0 199 34.2
Sc02g0005800 Simmondsia chinensis HOM05D001749 ORTHO05D001632 3.8e-06 56.2 235 26.8
VMungo1215G0703 Vigna mungo HOM05D001749 ORTHO05D001632 3.8e-06 56.2 236 28.8
BcaNung05717 Brassica carinata HOM05D001749 ORTHO05D001632 5.0e-06 55.8 75 36.0
Psat2g157560 Pisum sativum HOM05D001749 ORTHO05D001632 5.0e-06 55.8 230 28.7
Prupe.8G094100 Prunus persica HOM05D001749 ORTHO05D001632 5.0e-06 55.8 232 26.7
PGSC0003DMG400003697 Solanum tuberosum HOM05D001749 ORTHO05D001632 5.0e-06 55.8 239 25.5
CAN.G1336.2 Capsicum annuum HOM05D001749 ORTHO05D001632 6.6e-06 55.5 146 30.8
Hma1.2p1_0066F.1_g036220 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 6.6e-06 55.5 226 27.0


User provided reference genes

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