Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.7e-115 418.7 211 100.0
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 4.0e-55 218.8 113 92.9
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.0e-42 176.0 113 82.3
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.5e-41 173.7 113 78.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 4.1e-23 112.5 117 55.6
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.7e-21 107.1 123 51.2
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 5.0e-21 105.5 126 51.6
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 6.5e-21 105.1 116 51.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.1e-20 104.4 127 46.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.1e-20 104.4 127 46.5
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.9e-20 103.6 115 49.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 2.5e-20 103.2 120 49.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.5e-20 103.2 117 50.4
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.2e-20 102.4 118 50.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.5e-20 102.1 119 47.1
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 5.5e-20 102.1 120 44.2
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 9.4e-20 101.3 117 51.3
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.2e-19 100.9 117 51.3
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.2e-19 100.9 108 54.6
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.6e-19 100.5 119 47.1
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-19 100.5 125 46.4
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.6e-19 100.5 120 49.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.6e-19 100.5 116 50.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.1e-19 100.1 119 47.1
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 2.1e-19 100.1 123 47.2
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 2.7e-19 99.8 119 48.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.7e-19 99.0 119 46.2
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-19 98.6 119 45.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-19 98.6 119 45.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 6.1e-19 98.6 119 45.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 6.1e-19 98.6 119 45.4
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 6.1e-19 98.6 119 45.4
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 6.1e-19 98.6 114 48.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.0e-18 97.8 108 52.8
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-18 97.1 117 49.6
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-18 96.7 120 49.2
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-18 96.7 119 44.5
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-18 96.3 120 49.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-18 96.3 120 49.2
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 3.0e-18 96.3 120 49.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.0e-18 95.9 118 47.5
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-18 95.5 120 49.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.2e-18 95.5 120 49.2
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 5.2e-18 95.5 116 50.0
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.2e-18 95.5 117 44.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 6.7e-18 95.1 115 43.5
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-18 95.1 119 44.5
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 6.7e-18 95.1 119 44.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 6.7e-18 95.1 117 48.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.7e-18 95.1 118 46.6
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.7e-18 95.1 122 48.4
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 8.8e-18 94.7 114 44.7
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 8.8e-18 94.7 119 45.4
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.8e-18 94.7 115 44.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.8e-18 94.7 120 45.8
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-17 94.4 119 43.7
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-17 94.4 119 43.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.1e-17 94.4 128 46.1
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.5e-17 94.0 112 48.2
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-17 93.6 120 45.8
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-17 93.6 120 45.8
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.0e-17 93.6 117 48.7
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.0e-17 93.6 123 44.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 2.0e-17 93.6 114 45.6
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.6e-17 93.2 119 46.2
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.3e-17 92.8 133 44.4
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.4e-17 92.4 120 45.0
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 4.4e-17 92.4 114 47.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.4e-17 92.4 119 44.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 4.4e-17 92.4 130 44.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 5.7e-17 92.0 120 45.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 5.7e-17 92.0 117 47.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 5.7e-17 92.0 114 47.4
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 5.7e-17 92.0 119 43.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 7.5e-17 91.7 120 45.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.5e-17 91.7 120 45.8
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 7.5e-17 91.7 98 48.0
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 9.7e-17 91.3 120 44.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 9.7e-17 91.3 123 43.9
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.3e-16 90.9 117 48.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-16 90.5 122 45.1
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.2e-16 90.1 118 44.9
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.8e-16 89.7 121 43.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-16 89.4 120 43.3
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 6.3e-16 88.6 122 44.3
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 8.2e-16 88.2 113 44.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.4e-15 87.4 124 44.4
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.4e-15 86.7 124 46.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.1e-15 85.9 122 42.6
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.3e-15 85.5 116 44.8
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 9.1e-15 84.7 122 42.6
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.2e-14 84.3 122 40.2
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.6e-14 84.0 124 43.5
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-14 84.0 124 38.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.6e-14 84.0 122 40.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-14 83.6 121 43.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.5e-14 82.8 123 41.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.5e-14 82.8 114 41.2
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.9e-14 82.0 117 41.9
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 7.7e-14 81.6 106 42.5
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.0e-13 81.3 128 39.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.0e-13 81.3 109 47.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-13 81.3 117 43.6
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.0e-13 81.3 112 46.4
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-13 80.9 122 42.6
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-13 80.9 122 42.6
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-13 80.9 122 42.6
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-13 80.9 122 42.6
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-13 80.9 122 42.6
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.7e-13 80.5 123 41.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.7e-13 80.5 110 42.7
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.7e-13 80.5 111 45.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.2e-13 80.1 111 45.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.0e-13 79.0 123 39.8
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.0e-13 79.0 114 41.2
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 8.5e-13 78.2 107 39.3
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-12 77.8 122 41.0
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-12 77.8 122 41.0
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.5e-12 77.4 89 47.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.5e-12 77.4 117 42.7
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 2.5e-12 76.6 128 39.8
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-12 76.3 124 41.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 4.2e-12 75.9 166 37.3
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.2e-12 75.9 111 45.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 7.2e-12 75.1 117 39.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.4e-12 74.7 121 40.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 9.4e-12 74.7 122 39.3
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.6e-11 73.9 123 47.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.1e-11 73.6 125 42.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.6e-11 72.8 119 37.8
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.6e-11 72.8 111 43.2
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.7e-11 72.4 81 48.1
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.1e-11 72.0 113 39.8
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 6.1e-11 72.0 124 37.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 6.1e-11 72.0 111 41.4
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.0e-10 71.2 114 38.6
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.8e-10 70.5 116 40.5
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 4.0e-10 69.3 105 41.0
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 4.0e-10 69.3 52 51.9
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.2e-10 68.9 123 37.4
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 5.2e-10 68.9 120 39.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 6.8e-10 68.6 119 38.7
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 8.8e-10 68.2 119 38.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.8e-10 68.2 124 37.9
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.8e-10 68.2 124 37.9
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-09 67.8 121 38.0
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-09 67.8 126 38.9
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.6e-09 66.6 82 46.3
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.4e-09 66.2 119 36.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.4e-09 66.2 82 45.1
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 4.4e-09 65.9 108 36.1
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 4.4e-09 65.9 117 42.7
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 5.7e-09 65.5 121 36.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.5e-09 65.1 124 34.7
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 7.5e-09 65.1 109 41.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-08 64.3 150 33.3
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.2e-08 63.5 106 39.6
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 2.8e-08 63.2 90 47.8
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 2.8e-08 63.2 118 38.1
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.8e-08 62.4 110 35.5
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-08 62.0 114 38.6
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 6.3e-08 62.0 130 34.6
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 6.3e-08 62.0 114 38.6
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 6.3e-08 62.0 114 38.6
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.3e-08 62.0 94 38.3
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 8.3e-08 61.6 111 35.1
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.4e-07 60.1 121 33.9
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-07 59.7 59 47.5
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-07 59.3 145 32.4
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.1e-07 59.3 124 38.7
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.4e-07 58.9 106 36.8
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-06 57.0 127 33.1
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.0e-06 57.0 127 33.1
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.0e-06 57.0 127 33.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.5e-06 56.2 98 34.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.5e-06 55.8 52 46.2


User provided reference genes

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