Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G045750 Cucumis sativus L. HOM05D000341 ORTHO05D000557 3.7e-67 258.1 130 100.0
ClCG01G019070 Citrullus lanatus HOM05D000341 ORTHO05D000557 3.7e-59 231.5 162 76.5
MELO3C007785.2 Cucumis melo HOM05D000341 ORTHO05D000557 8.6e-56 220.3 153 77.8
Sed0001488 Sechium edule HOM05D000341 ORTHO05D000557 8.9e-53 210.3 158 70.9
Sed0011169 Sechium edule HOM05D000341 ORTHO05D000557 6.6e-48 194.1 162 65.4
FAN28G0060 Fragaria x ananassa HOM05D000341 ORTHO05D000557 3.9e-40 168.3 164 54.3
FAN19G0213 Fragaria x ananassa HOM05D000341 ORTHO05D000557 5.0e-40 167.9 164 54.3
FAN23G2291 Fragaria x ananassa HOM05D000341 ORTHO05D000557 5.0e-40 167.9 164 54.3
Duzib187G0655 Durio zibethinus HOM05D000341 ORTHO05D000557 8.6e-40 167.2 164 56.1
FvH4_1g21810 Fragaria vesca HOM05D000341 ORTHO05D000557 1.1e-39 166.8 164 54.3
Prupe.6G177600 Prunus persica HOM05D000341 ORTHO05D000557 4.3e-39 164.9 165 55.2
Thecc.01G109100 Theobroma cacao HOM05D000341 ORTHO05D000557 4.3e-39 164.9 163 55.2
COL.COLO4_11044 Corchorus olitorius HOM05D000341 ORTHO05D000557 4.7e-38 161.4 171 53.2
Duzib264G1186 Durio zibethinus HOM05D000341 ORTHO05D000557 4.0e-37 158.3 165 53.9
MD15G1330200 Malus domestica HOM05D000341 ORTHO05D000557 4.0e-37 158.3 162 52.5
RcHm_v2.0_Chr2g0115671 Rosa chinensis HOM05D000341 ORTHO05D000557 6.8e-37 157.5 154 54.5
Haze_25006 Corylus avellana HOM05D000341 ORTHO05D000557 8.9e-37 157.1 162 52.5
QL06p050644 Quercus lobata HOM05D001778 ORTHO05D000557 1.5e-36 156.4 163 54.0
Gohir.A02G133300 Gossypium hirsutum HOM05D000341 ORTHO05D000557 2.6e-36 155.6 165 51.5
Gorai.003G045800 Gossypium raimondii HOM05D000341 ORTHO05D000557 4.4e-36 154.8 165 51.5
FAN26G0278 Fragaria x ananassa HOM05D000341 ORTHO05D000557 5.8e-36 154.5 154 54.5
Cfa008160 Carpinus fangiana HOM05D000341 ORTHO05D000557 7.5e-36 154.1 162 51.9
Gohir.D03G044700 Gossypium hirsutum HOM05D000341 ORTHO05D000557 1.3e-35 153.3 165 50.9
QL06p033101 Quercus lobata HOM05D000341 ORTHO05D000557 4.9e-35 151.4 164 52.4
CiPaw.04G094800 Carya illinoinensis HOM05D000341 ORTHO05D000557 2.1e-33 146.0 165 50.3
CiPaw.03G137400 Carya illinoinensis HOM05D000341 ORTHO05D000557 1.0e-32 143.7 162 48.8
Potri.005G081200 Populus trichocarpa HOM05D000341 ORTHO05D000557 3.9e-32 141.7 163 48.5
CANSAT01G2553 Cannabis sativa HOM05D000341 ORTHO05D000557 1.1e-31 140.2 162 48.1
MD01G1022200 Malus domestica HOM05D000341 ORTHO05D000557 2.5e-31 139.0 157 49.0
Duzib147G0752 Durio zibethinus HOM05D000341 ORTHO05D000557 2.1e-30 136.0 158 52.5
Potri.007G086300 Populus trichocarpa HOM05D000341 ORTHO05D000557 1.5e-28 129.8 164 45.7
TWI53G0457 Tripterygium wilfordii HOM05D000341 ORTHO05D000557 4.4e-28 128.3 159 45.9
Manes.12G139600 Manihot esculenta HOM05D000341 ORTHO05D000557 2.2e-27 125.9 164 45.1
Manes.13G088541 Manihot esculenta HOM05D000341 ORTHO05D000557 3.7e-27 125.2 164 45.7
Nitab4.5_0000727g0040 Nicotiana tabacum HOM05D000341 ORTHO05D000557 9.2e-26 120.6 165 45.5
Nitab4.5_0004756g0010 Nicotiana tabacum HOM05D000341 ORTHO05D000557 1.2e-25 120.2 165 44.8
TAR280G0003 Trochodendron aralioides HOM05D000341 ORTHO05D000557 1.2e-25 120.2 161 43.5
Cc07_g15730 Coffea canephora HOM05D000341 ORTHO05D000557 2.1e-25 119.4 165 44.8
Dinv21961 Davidia involucrata HOM05D000341 ORTHO05D000557 2.1e-25 119.4 157 45.2
Sopen04g024160 Solanum pennellii HOM05D000341 ORTHO05D000557 4.6e-25 118.2 166 44.6
Sabra05G0066500 Salix brachista HOM05D000341 ORTHO05D000557 6.0e-25 117.9 156 42.3
Solyc04g054370.1 Solanum lycopersicum HOM05D000341 ORTHO05D000557 7.8e-25 117.5 169 45.6
PGSC0003DMG400012791 Solanum tuberosum HOM05D000341 ORTHO05D000557 1.0e-24 117.1 166 44.6
TAR381G1390 Trochodendron aralioides HOM05D000341 ORTHO05D000557 1.0e-24 117.1 161 42.9
PGR102G2338 Punica granatum HOM05D000341 ORTHO05D000557 5.1e-24 114.8 173 41.6
TWI77G1035 Tripterygium wilfordii HOM05D000341 ORTHO05D000557 6.6e-24 114.4 161 42.9
TAR625G0106 Trochodendron aralioides HOM05D000341 ORTHO05D000557 3.3e-23 112.1 159 44.7
Oeu028383.1 Olea europaea HOM05D000341 ORTHO05D000557 7.3e-23 110.9 155 41.3
CSS0006976 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D000557 6.2e-22 107.8 173 39.9
CSS0020246 Camellia sinensis var. sinensis HOM05D000341 ORTHO05D000557 6.2e-22 107.8 173 39.9
Glyma.08G139700 Glycine max HOM05D000341 ORTHO05D000557 4.4e-20 101.7 163 38.0
Potri.007G086200 Populus trichocarpa HOM05D000341 ORTHO05D000557 3.8e-19 98.6 166 38.0
TAR628G0099 Trochodendron aralioides HOM05D000341 ORTHO05D000557 4.9e-19 98.2 161 39.1
Glyma.05G182000 Glycine max HOM05D000341 ORTHO05D000557 8.4e-19 97.4 159 36.5
Lsat_1_v5_gn_5_40921 Lactuca sativa HOM05D000341 ORTHO05D000557 8.4e-19 97.4 173 38.7
TAR625G1423 Trochodendron aralioides HOM05D000341 ORTHO05D000557 5.4e-18 94.7 162 39.5
Potri.007G086100 Populus trichocarpa HOM05D000341 ORTHO05D000557 3.5e-17 92.0 166 37.3
Potri.005G081300 Populus trichocarpa HOM05D000341 ORTHO05D000557 6.0e-17 91.3 165 36.4
Sabra07G0071300 Salix brachista HOM05D000341 ORTHO05D000557 6.0e-17 91.3 153 40.5
Manes.13G088405 Manihot esculenta HOM05D000341 ORTHO05D000557 5.1e-16 88.2 166 35.5
DCAR_011484 Daucus carota HOM05D000341 ORTHO05D000557 7.3e-15 84.3 161 36.0
Phvul.002G263000 Phaseolus vulgaris HOM05D000341 ORTHO05D000557 4.8e-14 81.6 159 34.6
VMungo0251G3609 Vigna mungo HOM05D000341 ORTHO05D000557 4.8e-14 81.6 165 32.1
Lj4g0006409 Lotus japonicus HOM05D000341 ORTHO05D000557 1.1e-13 80.5 189 31.2
MSTRG.23321 Avicennia marina HOM05D000341 ORTHO05D000557 1.4e-13 80.1 168 35.1
Lalb_Chr13g0296101 Lupinus albus HOM05D000341 ORTHO05D000557 5.3e-13 78.2 157 33.1
Medtr8g091560 Medicago truncatula HOM05D001778 ORTHO05D000557 6.9e-13 77.8 156 34.6
HanXRQChr15g0470991 Helianthus annuus HOM05D000341 ORTHO05D000557 9.0e-13 77.4 89 44.9
TPR.G2210 Trifolium pratense HOM05D001778 ORTHO05D000557 9.0e-13 77.4 166 34.3
Ciclev10026954m.g Citrus clementina HOM05D000341 ORTHO05D000557 1.3e-11 73.6 100 42.0
TPR.G21073 Trifolium pratense HOM05D000341 ORTHO05D001197 2.9e-11 72.4 154 31.8
Nn5g28975 Nelumbo nucifera HOM05D000341 ORTHO05D000557 4.9e-11 71.6 158 32.3
Nn5g31360 Nelumbo nucifera HOM05D000341 ORTHO05D000557 4.9e-11 71.6 158 32.3
Psat7g052800 Pisum sativum HOM05D001778 ORTHO05D000557 4.9e-11 71.6 156 31.4
Medtr3g087900 Medicago truncatula HOM05D000341 ORTHO05D000557 3.2e-10 68.9 154 31.8
Migut.H02406 Erythranthe guttata HOM05D000341 ORTHO05D000557 1.6e-09 66.6 148 31.8
Lj6g0012588 Lotus japonicus HOM05D000341 ORTHO05D000557 1.6e-09 66.6 97 42.3
Glyma.11G236600 Glycine max HOM05D000341 ORTHO05D000557 4.6e-09 65.1 165 31.5
Nn1g05242 Nelumbo nucifera HOM05D000341 ORTHO05D000557 7.8e-09 64.3 156 29.5
DCAR_011483 Daucus carota HOM05D000341 ORTHO05D000557 1.3e-08 63.5 154 29.9
Glyma.18G020400 Glycine max HOM05D000341 ORTHO05D000557 1.3e-08 63.5 160 30.6
Lalb_Chr07g0184921 Lupinus albus HOM05D000341 ORTHO05D000557 1.3e-08 63.5 157 29.3
Phvul.001G249600 Phaseolus vulgaris HOM05D000341 ORTHO05D000557 2.5e-07 59.3 170 28.2
VMungo1383G2649 Vigna mungo HOM05D000341 ORTHO05D000557 3.3e-07 58.9 169 29.0
SGA_v2.0_scaffold2G01316 Striga asiatica HOM05D000341 ORTHO05D000557 8.1e-06 54.3 162 27.8


User provided reference genes

Program Settings