Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 0.0e+00 1212.2 659 100.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 0.0e+00 1127.1 659 91.8
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 1.8e-263 912.5 642 79.6
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.7e-253 879.4 681 75.8
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 8.8e-149 531.6 674 52.1
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 7.0e-146 521.9 668 51.2
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.0e-144 518.1 661 49.6
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.0e-144 515.8 669 49.9
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 3.2e-143 513.1 665 50.4
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.5e-143 512.3 666 49.8
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 4.7e-142 509.2 696 49.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 6.1e-142 508.8 693 48.5
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.4e-141 507.7 697 49.1
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.2e-141 505.8 678 49.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 8.8e-141 505.0 667 49.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 5.7e-140 502.3 663 48.6
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.1e-138 498.0 692 48.4
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.8e-138 497.3 653 50.1
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 9.1e-138 495.0 669 48.6
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 2.5e-135 486.9 669 48.9
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 9.4e-135 485.0 670 49.9
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.2e-134 484.6 664 47.7
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.6e-134 484.2 666 47.4
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 8.0e-134 481.9 666 47.1
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.8e-133 478.8 683 46.4
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 2.0e-132 477.2 696 48.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 3.4e-132 476.5 691 45.6
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 4.4e-132 476.1 699 46.8
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.7e-131 474.2 686 48.1
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.4e-130 471.1 673 47.8
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.2e-129 468.0 673 45.9
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 5.9e-129 465.7 473 58.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.7e-128 464.2 661 46.3
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 3.8e-128 463.0 678 46.2
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.8e-128 463.0 698 45.1
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 3.8e-128 463.0 676 46.4
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.3e-127 459.9 698 44.6
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.7e-126 456.1 735 44.5
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 8.0e-126 455.3 695 44.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 6.8e-125 452.2 685 45.0
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.2e-124 451.4 701 45.4
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 9.8e-124 448.4 673 45.5
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 2.8e-123 446.8 412 60.2
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 4.9e-123 446.0 645 44.8
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 2.4e-122 443.7 675 46.7
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 2.7e-121 440.3 684 44.9
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.0e-120 438.3 338 71.0
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 2.3e-120 437.2 621 48.0
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.9e-120 436.8 682 46.2
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 3.9e-120 436.4 676 45.0
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 3.3e-119 433.3 669 45.0
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.2e-118 431.4 694 43.9
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.6e-118 431.0 673 44.7
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 2.8e-118 430.3 683 45.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 3.6e-118 429.9 675 44.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 3.6e-118 429.9 671 43.8
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.4e-117 427.9 674 44.7
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.8e-117 427.6 632 46.4
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.1e-117 426.8 639 45.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.8e-117 425.6 676 43.6
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 8.9e-117 425.2 621 47.2
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 8.9e-117 425.2 607 47.8
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.6e-116 423.7 729 42.8
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.7e-115 421.0 644 44.6
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 4.9e-115 419.5 676 43.6
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 8.3e-115 418.7 679 43.6
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 8.3e-115 418.7 692 42.6
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 9.2e-114 415.2 676 44.5
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.2e-113 414.8 688 44.2
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 4.6e-113 412.9 625 45.8
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 6.0e-113 412.5 678 44.4
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.3e-112 411.4 709 42.0
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.3e-112 410.6 342 66.1
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 1.2e-110 404.8 685 43.5
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 2.8e-110 403.7 640 43.8
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 3.6e-110 403.3 742 39.9
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.7e-110 402.9 688 42.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 1.1e-109 401.7 673 42.1
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.4e-109 401.4 676 42.0
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.0e-109 399.8 505 50.3
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 8.9e-109 398.7 671 42.6
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-107 394.4 700 42.0
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 2.2e-107 394.0 671 43.2
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.4e-106 391.3 687 41.5
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.1e-106 389.8 515 48.2
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 4.1e-106 389.8 515 48.2
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 4.1e-106 389.8 383 61.6
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 7.1e-106 389.0 669 41.7
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 2.1e-105 387.5 622 43.4
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.0e-105 386.0 531 48.0
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.1e-104 382.9 687 42.1
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.8e-101 374.4 633 42.2
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 4.0e-101 373.2 640 43.3
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.4e-98 364.0 665 41.4
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.2e-97 361.7 495 48.1
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 2.1e-97 360.9 676 39.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.8e-93 347.8 357 56.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.6e-92 344.0 430 50.7
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.3e-87 327.0 507 43.8
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.3e-87 325.9 401 48.4
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 4.0e-85 320.1 552 42.0
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 5.1e-80 303.1 617 38.9
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 2.4e-77 294.3 669 35.6
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 5.1e-56 223.4 218 58.3
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 9.7e-55 219.2 366 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 2.8e-54 217.6 319 43.3
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.5e-51 206.5 292 45.9
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 4.2e-50 203.8 271 48.0
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.0e-48 197.6 476 33.2
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 6.7e-48 196.4 322 39.1
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.8e-46 191.0 454 34.6
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 4.1e-45 187.2 508 32.3
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.2e-44 185.7 514 29.0
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 5.0e-43 180.3 225 50.7
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.6e-41 175.3 125 68.8
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 5.1e-40 170.2 441 34.5
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 7.4e-39 166.4 112 75.0
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 4.8e-38 163.7 118 72.9
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 9.1e-37 159.5 118 68.6
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.6e-36 158.7 193 49.7
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 8.5e-35 152.9 116 69.0
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 5.5e-34 150.2 492 31.3
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.3e-31 141.0 111 66.7
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 8.2e-30 136.3 112 66.1
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 7.7e-28 129.8 141 58.2
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 2.5e-26 124.8 110 54.5
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-25 122.5 141 55.3
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-25 122.5 140 56.4
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.6e-25 122.1 93 71.0
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.7e-25 121.3 89 67.4
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 4.0e-24 117.5 224 35.3
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 8.8e-24 116.3 350 33.1
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 3.1e-21 107.8 90 61.1
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.0e-20 105.1 347 27.4
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 7.5e-15 86.7 81 56.8
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 1.0e-11 76.3 410 25.6
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-11 75.9 140 43.6
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 4.7e-09 67.4 54 63.0
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 8.0e-09 66.6 125 30.4
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 2.6e-07 61.6 53 56.6


User provided reference genes

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