Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.2e-194 683.3 447 100.0
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.4e-177 626.7 447 84.3
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.1e-174 617.1 448 84.4
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 7.1e-118 428.3 444 64.2
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.8e-105 387.1 254 77.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 9.0e-105 384.8 469 55.9
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.2e-104 384.4 464 54.1
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.0e-104 383.6 473 60.0
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 5.8e-104 382.1 251 75.3
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.8e-104 382.1 251 75.3
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 5.8e-104 382.1 246 79.3
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 5.8e-104 382.1 461 53.8
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 5.8e-104 382.1 451 57.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.7e-103 380.6 251 74.5
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.2e-103 380.2 253 73.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 2.9e-103 379.8 251 73.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.8e-103 379.4 251 74.5
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 3.8e-103 379.4 251 74.5
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 3.8e-103 379.4 248 75.4
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 8.4e-103 378.3 482 56.0
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.1e-102 377.9 238 80.7
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.1e-102 377.9 251 73.7
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.9e-102 377.1 470 57.2
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.9e-102 377.1 247 76.1
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.9e-102 377.1 242 77.7
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.5e-102 376.7 454 59.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 3.2e-102 376.3 251 73.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 3.2e-102 376.3 251 73.7
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.2e-102 376.3 244 77.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 5.5e-102 375.6 251 76.9
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 7.1e-102 375.2 244 77.5
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 9.3e-102 374.8 244 75.4
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.6e-101 374.0 250 75.2
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.7e-101 373.2 250 75.2
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.5e-101 372.9 474 59.1
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.6e-101 372.5 448 52.7
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.6e-101 372.5 252 74.6
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 7.9e-101 371.7 248 72.6
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-100 370.9 256 73.4
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.3e-100 370.9 464 51.7
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.3e-100 370.9 447 56.4
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 5.1e-100 369.0 458 54.1
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.7e-100 368.6 250 74.8
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.7e-100 368.6 244 75.4
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 5.7e-99 365.5 252 72.2
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 9.7e-99 364.8 252 71.8
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 9.7e-99 364.8 447 55.0
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.6e-98 364.0 252 71.8
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-98 363.2 444 52.9
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.7e-98 362.8 485 54.8
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.7e-98 362.8 454 58.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.8e-98 362.5 471 61.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 4.8e-98 362.5 244 73.8
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 8.2e-98 361.7 249 72.3
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 8.2e-98 361.7 249 72.3
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 1.1e-97 361.3 457 52.7
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.4e-97 360.9 246 74.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.4e-97 360.9 447 52.3
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 4.1e-97 359.4 451 56.3
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 4.1e-97 359.4 247 74.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 5.3e-97 359.0 252 71.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.5e-96 357.5 247 75.7
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.5e-96 357.5 444 51.1
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.6e-96 356.7 247 74.9
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.0e-95 354.8 431 55.9
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.0e-95 354.8 476 51.7
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.9e-95 353.2 254 72.4
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 6.5e-95 352.1 252 71.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 8.5e-95 351.7 255 71.0
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.1e-94 351.3 241 73.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.5e-94 350.1 241 73.4
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.2e-94 349.7 257 71.6
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.2e-94 349.4 508 47.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 9.4e-94 348.2 252 71.0
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.0e-92 343.2 251 69.3
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 5.1e-92 342.4 260 69.6
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.1e-91 341.3 251 69.7
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.5e-91 340.9 245 72.7
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.7e-90 337.4 238 71.4
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.2e-90 337.0 438 53.2
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.8e-90 336.7 230 73.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.1e-89 334.7 251 69.3
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.4e-89 333.6 259 66.4
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.1e-89 332.8 256 67.2
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-88 331.3 231 70.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.6e-88 330.1 244 69.3
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-88 329.7 248 68.5
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 7.7e-88 328.6 243 65.8
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.3e-87 327.8 444 48.2
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.1e-86 324.7 239 67.8
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.1e-86 324.7 248 66.9
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.2e-86 322.8 255 65.9
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.5e-86 322.4 444 47.1
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 7.2e-86 322.0 258 65.1
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.4e-86 321.6 449 47.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.2e-85 321.2 239 66.5
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.2e-85 321.2 258 64.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.2e-85 321.2 251 66.5
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.2e-85 321.2 251 66.5
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.7e-85 320.1 252 65.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.4e-84 317.8 407 48.9
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 6.7e-84 315.5 249 67.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.1e-83 314.7 233 69.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.4e-83 312.8 387 54.3
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.7e-82 310.8 423 50.4
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.8e-81 307.4 248 63.7
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 7.0e-81 305.4 488 49.2
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 1.3e-79 301.2 407 46.2
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.9e-79 300.1 453 45.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.1e-78 298.1 460 46.5
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.5e-78 297.0 415 47.5
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.0e-76 291.6 465 48.8
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.0e-76 290.0 213 69.0
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 7.4e-75 285.4 248 60.1
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 7.4e-75 285.4 436 43.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.1e-73 281.6 221 62.4
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 3.1e-73 280.0 238 63.4
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 9.7e-67 258.5 229 56.8
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 9.1e-57 225.3 257 46.3
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 9.2e-49 198.7 238 46.2
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 5.9e-48 196.1 238 45.4
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.0e-44 185.3 252 39.3
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.9e-42 176.4 112 75.0
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 3.0e-39 167.2 229 38.9
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 2.5e-38 164.1 244 38.9
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.6e-38 162.9 235 43.0
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.2e-35 155.2 89 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.7e-34 151.4 243 37.9
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.2e-34 151.0 248 37.5
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.7e-34 150.2 131 57.3
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 5.1e-31 139.8 227 38.8
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.1e-28 130.6 244 31.1
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 6.4e-26 122.9 205 30.7
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.1e-24 117.9 220 37.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 2.7e-24 117.5 146 43.2
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 7.8e-24 115.9 228 30.3
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.3e-23 115.2 239 30.1
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 7.3e-22 109.4 89 64.0
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 7.6e-19 99.4 70 64.3
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-16 92.0 252 40.9
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.0e-15 89.0 123 43.1
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.9e-14 84.7 131 40.5
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 7.3e-14 82.8 211 30.3
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 5.3e-12 76.6 177 34.5
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.2e-11 75.5 108 43.5
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.2e-11 75.5 105 43.8
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.0e-11 74.7 105 41.0
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.1e-09 68.9 53 54.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.4e-09 67.8 54 48.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.2e-09 67.4 43 55.8
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 2.7e-08 64.3 134 33.6


User provided reference genes

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