Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.5e-164 582.8 306 100.0
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.5e-148 528.1 310 91.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.0e-131 471.5 393 68.4
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 8.6e-99 364.4 275 75.6
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 4.2e-93 345.5 307 64.2
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.3e-67 260.8 309 53.1
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.2e-61 239.6 290 51.4
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 9.3e-61 238.0 289 51.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.3e-59 233.4 225 61.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.3e-59 233.4 225 61.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.0e-59 233.0 291 50.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 8.7e-59 231.5 297 50.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 1.5e-58 230.7 303 50.5
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.9e-58 230.3 311 51.1
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.7e-58 228.8 295 49.8
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-57 227.6 219 60.3
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-57 227.6 219 60.3
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 3.7e-57 226.1 219 59.8
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.4e-56 224.2 311 50.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 3.1e-56 223.0 294 51.4
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.5e-55 219.2 226 58.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.5e-55 219.2 253 53.4
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.9e-55 218.8 286 51.0
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 7.7e-55 218.4 260 53.8
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.7e-54 217.2 304 49.3
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.7e-54 217.2 312 49.0
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.7e-54 217.2 222 59.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.9e-54 216.5 256 52.7
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 2.9e-54 216.5 287 49.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 1.1e-53 214.5 211 61.1
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.4e-53 214.2 296 51.0
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 4.2e-53 212.6 235 55.3
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 4.2e-53 212.6 263 52.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 5.5e-53 212.2 199 63.3
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.2e-52 211.1 268 47.8
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.2e-52 211.1 280 51.8
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.1e-52 210.3 287 49.8
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.1e-52 210.3 303 47.5
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.0e-51 208.0 276 50.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.0e-51 208.0 311 48.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-51 208.0 253 52.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.4e-51 207.6 310 47.1
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.8e-51 207.2 287 49.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.8e-51 207.2 198 61.1
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.9e-51 206.1 300 47.7
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.1e-51 205.7 283 49.5
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 6.7e-51 205.3 265 51.7
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.0e-50 203.8 241 54.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.5e-50 203.4 287 50.2
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 9.7e-50 201.4 283 48.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 2.2e-49 200.3 317 47.0
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 8.2e-49 198.4 279 46.6
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.4e-48 197.6 140 76.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.8e-48 197.2 278 48.9
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.1e-48 196.4 262 49.6
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 6.9e-48 195.3 270 49.6
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 9.1e-48 194.9 194 60.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.2e-47 194.5 289 45.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.2e-47 194.5 286 45.1
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.5e-47 194.1 206 57.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.3e-46 191.0 194 59.8
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.2e-46 190.3 282 47.5
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 3.8e-46 189.5 311 44.7
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 3.8e-46 189.5 223 52.9
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.8e-46 189.5 269 49.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 5.0e-46 189.1 287 44.9
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 8.5e-46 188.3 286 48.3
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.1e-45 188.0 192 57.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.1e-45 188.0 190 56.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.4e-45 187.6 322 45.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.9e-45 187.2 222 53.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.2e-45 186.4 145 72.4
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 4.2e-45 186.0 290 43.8
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.6e-44 184.1 210 54.8
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.6e-44 183.0 197 57.4
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 4.7e-44 182.6 288 45.5
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.7e-44 182.6 309 44.0
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.1e-44 182.2 307 42.3
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.9e-44 181.8 181 58.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.8e-43 180.6 290 44.1
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.9e-43 179.5 284 46.5
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 3.9e-43 179.5 175 61.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.8e-43 178.3 270 44.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-42 177.9 270 44.8
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.5e-42 177.6 189 55.6
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.5e-42 177.6 189 56.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.5e-42 177.6 189 55.6
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.3e-42 176.4 221 50.7
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.3e-42 176.4 250 48.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.4e-42 176.0 315 42.5
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.7e-41 174.1 189 55.0
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.7e-41 174.1 262 46.2
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.7e-41 174.1 203 55.2
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.7e-41 174.1 282 44.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 2.2e-41 173.7 189 55.6
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.8e-41 172.6 281 46.6
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 4.8e-41 172.6 189 54.5
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.4e-40 171.0 288 43.8
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.4e-40 171.0 288 43.8
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.8e-40 170.6 288 43.1
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 2.4e-40 170.2 195 53.8
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 3.1e-40 169.9 285 42.5
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.1e-40 169.9 280 44.6
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 7.0e-40 168.7 285 42.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 9.1e-40 168.3 323 41.8
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 7.7e-39 165.2 288 43.4
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.7e-39 165.2 282 45.4
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 1.0e-38 164.9 154 63.0
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.0e-38 164.9 366 37.4
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.7e-38 164.1 151 62.9
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 6.5e-38 162.2 204 51.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 4.2e-37 159.5 267 44.2
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.6e-36 156.4 222 48.2
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 6.1e-36 155.6 204 47.5
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.9e-35 152.9 109 77.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 9.7e-34 148.3 196 48.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 4.8e-33 146.0 188 48.9
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 8.2e-33 145.2 192 48.4
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 5.3e-32 142.5 137 60.6
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.2e-31 141.4 135 60.7
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 2.0e-31 140.6 141 60.3
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 5.9e-31 139.0 190 47.4
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 7.7e-31 138.7 106 70.8
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.3e-30 137.9 154 56.5
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 3.8e-30 136.3 148 56.8
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 8.5e-30 135.2 119 63.9
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-29 134.8 116 66.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 4.7e-28 129.4 164 48.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 8.0e-28 128.6 195 44.6
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 3.4e-26 123.2 226 43.4
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.2e-23 114.8 84 75.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.6e-23 114.4 221 37.6
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.5e-22 109.0 118 55.1
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.8e-19 100.9 101 55.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 9.8e-18 95.1 115 50.4
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.7e-17 93.2 197 37.1
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 7.0e-16 89.0 101 52.5
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.7e-15 87.0 61 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.9e-15 85.9 232 34.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.3e-14 84.7 61 73.8
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 5.0e-14 82.8 184 32.6
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.9e-13 80.9 163 34.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.5e-13 79.3 78 60.3
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.4e-11 74.7 116 45.7
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.6e-10 70.5 114 47.4
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.6e-10 70.5 49 79.6
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.4e-10 69.7 46 78.3


User provided reference genes

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