Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 2542.3 1276 100.0
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 2182.9 1160 94.8
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 2179.1 1289 86.0
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1993.8 1275 79.8
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1198.7 1321 51.5
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1195.6 1320 52.0
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1177.2 1339 49.7
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1159.1 1342 48.5
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1154.4 1340 49.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1137.5 1345 47.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1136.7 1342 47.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1124.8 1312 48.1
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1124.0 1345 47.7
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1119.8 1303 48.3
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1104.7 1332 48.3
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1092.0 1359 47.6
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1078.2 1336 47.3
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1077.4 1335 47.4
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1075.8 1335 47.3
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 8.7e-312 1074.3 1324 47.5
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 4.4e-311 1071.6 1344 46.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.5e-309 1066.6 1330 47.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 2.5e-309 1065.8 1328 47.2
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 7.3e-309 1064.3 1351 46.6
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 2.0e-306 1056.2 1329 46.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.4e-306 1055.0 1354 46.2
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 3.7e-305 1052.0 1350 45.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 3.7e-305 1052.0 1350 46.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 3.2e-304 1048.9 1337 46.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.1e-303 1046.2 1306 46.9
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 9.6e-301 1037.3 1350 45.6
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.6e-300 1036.6 1335 46.1
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.4e-296 1023.5 1320 44.5
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 2.1e-295 1019.6 1312 44.7
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 9.9e-290 1000.7 1223 48.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.3e-284 983.8 1243 46.6
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 8.1e-284 981.1 1295 44.4
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 1.2e-279 967.2 1437 40.8
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 3.5e-279 965.7 1316 43.5
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.9e-278 962.2 1353 44.2
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.6e-276 956.8 1314 43.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.1e-276 956.4 1294 43.2
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.3e-270 937.2 1297 42.4
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 3.0e-270 936.0 1299 42.1
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 9.6e-269 931.0 1285 43.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 9.6e-269 931.0 1287 42.5
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 9.6e-269 931.0 1374 43.1
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.5e-266 923.7 1282 42.7
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.6e-263 913.7 1333 42.2
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.3e-262 909.8 1266 43.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 3.0e-262 909.4 1311 43.2
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 3.3e-261 906.0 1303 43.4
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 4.3e-261 905.6 1304 42.2
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 1.3e-260 904.0 1318 42.0
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 9.0e-259 897.9 1306 41.7
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 9.0e-259 897.9 1307 42.5
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.2e-256 889.0 1277 41.6
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.6e-255 887.1 1321 41.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.6e-255 887.1 1318 41.8
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.6e-255 887.1 1310 42.5
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 7.9e-255 884.8 1194 44.0
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.5e-253 880.6 1193 43.0
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.3e-252 877.5 1281 41.6
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.2e-250 870.9 1330 41.4
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.2e-247 860.9 1232 41.8
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.6e-247 860.5 1320 40.9
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 4.4e-245 852.4 1329 41.4
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 7.4e-245 851.7 1335 40.1
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 4.1e-243 845.9 1270 40.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 5.5e-240 835.5 1264 40.9
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 5.4e-227 792.3 1256 38.9
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 4.5e-226 789.3 1303 38.9
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.9e-218 762.3 1300 38.7
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.2e-213 748.0 1317 38.6
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 6.8e-206 722.2 1288 37.0
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 7.5e-205 718.8 1277 37.5
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.2e-202 711.4 1339 37.1
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 6.8e-198 695.7 1235 37.8
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 2.0e-197 694.1 1313 37.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 3.7e-196 689.9 1268 37.3
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.3e-196 688.7 1043 40.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.9e-184 651.0 1284 36.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 4.6e-178 629.8 1261 35.6
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.7e-177 627.9 1032 39.5
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 4.9e-172 609.8 1148 36.3
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 8.4e-172 609.0 695 51.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 3.0e-169 600.5 1262 34.5
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.1e-168 598.6 711 48.8
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 9.6e-168 595.5 1214 35.8
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 8.1e-167 592.4 669 51.4
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 6.4e-164 582.8 1264 33.9
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.2e-162 578.6 1226 33.7
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.3e-153 548.5 691 46.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.5e-152 545.0 1254 33.1
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.6e-133 481.1 750 40.7
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.9e-131 474.9 847 38.0
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.2e-131 474.2 710 43.1
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.2e-130 472.2 647 41.1
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-125 455.3 645 42.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.2e-119 434.9 569 42.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.9e-115 421.8 710 40.8
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.6e-106 391.0 702 35.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 3.2e-94 351.3 669 39.8
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 9.2e-94 349.7 365 52.3
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.9e-91 342.0 680 36.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.2e-90 339.3 627 38.4
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.6e-82 312.4 1068 27.6
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.6e-77 295.8 818 28.1
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.4e-65 255.4 313 43.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.8e-61 240.4 432 35.2
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.7e-55 222.6 939 25.5
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.7e-44 184.1 309 37.9
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 4.5e-40 171.4 534 31.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 5.8e-40 171.0 266 40.2
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.2e-32 146.7 507 30.6
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 9.1e-25 120.6 297 26.9
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.9e-23 115.5 448 24.6
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 5.0e-23 114.8 116 53.4
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.4e-22 113.2 377 25.5
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.6e-19 102.4 442 28.3
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 7.4e-19 100.9 523 27.9
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-18 99.8 487 27.3
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.2e-18 99.4 487 27.3
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 8.2e-18 97.4 520 26.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 4.1e-17 95.1 486 27.6
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 4.5e-16 91.7 216 32.4
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 5.9e-16 91.3 478 28.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 5.9e-16 91.3 478 28.2
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-15 89.7 290 35.5
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-15 89.7 290 35.5
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.9e-14 86.3 143 34.3
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 1.6e-13 83.2 106 36.8
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.1e-13 82.8 514 25.3
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.5e-11 76.6 325 24.9
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 2.6e-11 75.9 500 23.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.3e-11 75.5 80 48.8
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 2.2e-10 72.8 505 22.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 4.8e-10 71.6 494 25.7
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.3e-07 63.5 99 41.4


User provided reference genes

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