Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 1.2e-305 1052.4 528 100.0
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.4e-274 949.1 526 91.6
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 2.3e-261 905.2 525 86.9
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 3.3e-239 831.6 525 79.8
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 2.2e-198 696.0 533 65.1
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 4.1e-197 691.8 533 66.0
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 4.1e-197 691.8 531 65.7
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 8.5e-195 684.1 532 64.5
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 2.7e-193 679.1 532 62.8
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.8e-192 676.4 531 64.2
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 6.7e-192 674.5 533 64.9
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 6.7e-192 674.5 531 64.6
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 2.6e-191 672.5 531 64.2
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 2.4e-189 666.0 532 62.8
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 9.1e-189 664.1 531 62.5
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.2e-188 663.7 531 64.2
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 4.5e-188 661.8 529 63.1
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 4.5e-188 661.8 533 63.6
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 2.2e-187 659.4 533 64.0
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.9e-187 659.1 532 63.0
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.5e-186 656.0 533 61.5
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.1e-185 652.9 543 62.6
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 4.7e-185 651.7 528 63.1
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 4.7e-185 651.7 531 61.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.5e-183 646.7 531 61.8
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.4e-183 645.2 519 61.1
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.7e-182 643.3 530 60.4
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.1e-181 640.6 536 60.6
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.1e-181 637.5 519 60.5
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.2e-180 637.1 519 61.3
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.0e-179 634.0 519 60.1
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.0e-179 634.0 519 59.5
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 1.7e-179 633.3 526 61.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 2.9e-179 632.5 525 61.3
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 5.0e-179 631.7 511 61.6
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.1e-178 630.6 496 64.7
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 5.5e-178 628.2 531 59.5
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.2e-177 627.1 533 59.7
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.1e-177 626.3 532 59.6
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 4.7e-177 625.2 527 60.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 4.7e-177 625.2 532 59.4
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.4e-176 623.6 529 60.9
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 8.8e-176 620.9 532 59.0
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 3.4e-175 619.0 529 60.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 3.4e-175 619.0 528 59.1
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 5.7e-175 618.2 550 58.4
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 5.7e-175 618.2 530 58.3
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 5.7e-175 618.2 526 59.5
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 2.2e-174 616.3 527 58.4
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 6.3e-174 614.8 558 57.2
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.1e-173 612.5 532 59.2
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 3.1e-173 612.5 532 58.3
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 5.9e-172 608.2 531 59.1
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.9e-171 605.9 530 57.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 3.8e-171 605.5 528 59.5
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.1e-170 604.0 532 59.8
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 3.3e-170 602.4 531 58.2
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 7.2e-170 601.3 530 59.2
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 9.5e-170 600.9 517 58.8
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.2e-169 600.5 528 59.3
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 6.1e-169 598.2 528 59.3
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 6.1e-169 598.2 503 59.8
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 3.0e-168 595.9 527 57.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 2.2e-166 589.7 502 59.8
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.2e-166 589.7 529 57.3
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 8.3e-166 587.8 533 56.1
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 9.2e-165 584.3 529 58.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-164 583.9 529 57.3
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.5e-164 582.0 529 58.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.3e-163 580.5 529 59.0
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.9e-163 579.3 529 56.7
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 3.3e-162 575.9 529 58.0
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 3.3e-162 575.9 529 54.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 3.3e-162 575.9 477 60.4
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 4.3e-162 575.5 502 58.4
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 1.6e-161 573.5 527 56.5
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.5e-159 567.0 528 58.1
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.2e-158 563.1 528 56.1
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.9e-158 562.8 530 54.3
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 1.9e-157 560.1 531 55.4
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 6.6e-155 551.6 446 61.2
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.5e-154 550.4 563 53.3
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 4.3e-154 548.9 531 55.7
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 4.0e-152 542.3 529 56.7
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 6.8e-152 541.6 520 53.7
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.7e-150 537.0 528 54.7
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.7e-150 537.0 528 54.7
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.7e-150 537.0 528 51.5
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 3.0e-147 526.2 612 48.0
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 3.1e-144 516.2 528 53.6
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 3.1e-144 516.2 528 53.6
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 5.2e-144 515.4 528 53.4
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 1.7e-142 510.4 395 62.8
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.1e-141 507.7 527 50.5
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 8.6e-139 498.0 499 53.1
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.1e-132 476.9 385 62.6
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.8e-128 463.8 460 53.5
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 9.0e-128 461.5 533 45.8
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.1e-123 445.7 369 60.7
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 6.6e-123 445.3 367 61.6
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-120 438.0 415 55.7
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.9e-118 429.9 350 61.7
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.5e-108 396.4 531 42.9
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 2.6e-95 353.6 562 38.4
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.4e-93 347.8 373 50.7
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 2.3e-91 340.5 313 55.9
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 5.0e-86 322.8 559 37.2
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 5.7e-82 309.3 514 38.9
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 5.9e-71 272.7 248 55.2
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 4.7e-68 263.1 248 54.0
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.9e-53 214.5 528 30.5
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 4.2e-53 213.4 165 66.7
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 6.1e-52 209.5 163 65.0
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 4.0e-51 206.8 212 53.3
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 5.4e-48 196.4 254 44.5
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 8.3e-33 146.0 136 55.1
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 4.1e-32 143.7 152 48.7
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.3e-29 134.0 98 62.2
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 4.4e-26 123.6 117 53.8
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.9e-24 118.2 122 50.0
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 2.3e-22 111.3 115 52.2
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 2.3e-22 111.3 115 52.2
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 9.6e-21 105.9 197 31.0
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 4.0e-19 100.5 557 22.4
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.5e-18 98.6 77 59.7
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 7.6e-18 96.3 90 54.4
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.3e-17 95.5 73 69.9
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.9e-17 94.4 77 58.4
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.4e-11 75.5 331 23.0
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.8e-11 75.1 120 40.8
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 1.7e-06 58.5 71 43.7


User provided reference genes

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