Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 6251.0 3146 100.0
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 5328.8 3156 87.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 4412.4 3179 72.4
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 3701.8 2547 76.8
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2630.9 3228 47.2
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2605.5 3221 47.7
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2601.6 3224 47.2
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2598.5 3234 47.2
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2516.9 3228 45.8
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2504.6 3273 45.7
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2493.8 3215 45.7
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2451.4 3223 44.8
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2443.7 3236 45.1
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2437.9 3289 45.1
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2432.9 3272 45.1
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2429.1 3890 40.2
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2412.1 3275 44.8
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2392.8 3276 44.7
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2383.6 3222 44.4
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2375.5 3227 44.7
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2363.6 3246 44.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2338.9 3217 43.2
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2335.1 3339 42.7
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2333.1 3223 44.3
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2317.7 3222 43.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2305.0 3215 43.2
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2256.9 3221 42.5
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2254.9 3219 42.7
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2237.2 3314 42.5
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2219.1 3225 43.2
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2206.0 3261 42.1
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2204.1 3200 42.5
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2202.2 3214 41.9
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2188.7 2873 45.4
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2181.8 2993 44.4
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2173.7 3494 40.2
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2172.5 2943 45.2
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2146.7 3259 41.1
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2118.2 3226 40.4
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2115.9 3082 42.1
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2100.9 3246 41.0
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2071.6 3248 40.2
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2060.0 3266 39.6
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2055.0 3041 42.1
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2054.3 3221 39.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2025.0 3222 39.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2016.5 3236 39.4
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2010.7 3234 40.1
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1996.5 3222 39.5
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1996.5 3222 39.5
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1991.1 3242 39.4
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1980.3 3263 39.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1977.2 3202 39.3
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1976.1 3247 39.1
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1970.3 3228 38.9
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1969.5 3278 39.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1957.6 3252 38.3
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1955.6 3218 38.9
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1946.4 3270 38.3
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1940.6 3286 38.7
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1930.6 2088 51.6
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1926.8 3255 38.0
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1898.6 2344 47.6
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1894.4 2249 48.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1877.8 3224 38.1
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1851.3 3213 38.1
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1847.0 2908 40.1
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1845.5 3298 37.4
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1818.1 3160 37.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1817.0 3193 38.3
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1758.4 2483 42.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1730.3 3313 37.0
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1638.6 2924 37.1
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1565.8 2837 35.4
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1546.9 1722 49.7
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1541.9 3284 33.5
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1504.2 1272 62.7
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1504.2 1780 47.9
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1437.2 1446 52.6
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1389.8 1682 47.1
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1370.1 1382 54.3
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1363.2 1323 55.2
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1303.1 1335 53.8
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1267.7 1211 57.5
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1258.8 1760 43.1
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1246.5 1596 46.5
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1207.6 1332 49.3
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1162.1 3171 30.3
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1136.7 1210 51.3
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 2.2e-306 1057.4 1933 35.5
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.7e-298 1031.2 2015 34.3
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 3.4e-283 980.3 2558 31.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 5.5e-281 973.0 1889 35.2
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.0e-255 887.5 1408 40.6
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.4e-249 868.6 1318 40.8
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.2e-229 801.6 1115 43.2
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.1e-216 758.4 449 85.7
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.0e-214 751.9 1885 31.1
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.4e-207 729.2 594 63.6
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 8.6e-202 709.9 1906 28.6
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.8e-175 622.5 661 51.6
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.0e-170 606.7 1728 29.4
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.2e-158 566.6 2153 26.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 7.6e-158 563.9 1582 30.9
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.2e-149 535.8 953 37.9
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.9e-148 532.7 973 37.6
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 6.1e-115 421.4 888 33.8
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.1e-111 409.1 949 32.3
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 9.1e-111 407.5 864 33.0
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.2e-110 407.1 885 33.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.3e-109 403.7 1321 25.9
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 6.8e-106 391.3 876 30.9
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.4e-105 388.7 1312 26.0
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 6.3e-104 384.8 913 28.9
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-103 383.6 1305 26.1
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 7.8e-102 377.9 460 44.1
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.7e-93 350.1 908 29.2
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.7e-88 332.4 1204 24.8
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.8e-82 313.5 332 52.7
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.4e-79 302.0 189 80.4
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.8e-74 287.0 217 65.4
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 5.4e-71 275.4 667 31.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 9.0e-66 258.1 920 27.6
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 9.3e-63 248.1 224 55.8
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.1e-59 236.9 1227 24.1
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 6.4e-56 225.3 427 35.8
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 1.5e-52 214.2 381 38.6
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 6.7e-45 188.7 226 47.8
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.4e-42 181.0 147 63.3
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.4e-42 181.0 146 63.7
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.8e-42 180.6 146 62.3
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 1.9e-36 160.6 136 58.8
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 5.7e-36 159.1 156 50.0
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.0e-33 150.6 105 69.5
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 5.9e-33 149.1 546 28.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-31 142.9 615 24.9
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 4.2e-31 142.9 1008 21.2
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 7.9e-30 138.7 197 43.1
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.1e-26 128.3 262 31.7
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.0e-24 121.7 331 28.7
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.9e-24 120.2 224 32.6
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.2e-23 116.7 172 41.3
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 4.7e-22 112.8 203 34.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 7.9e-22 112.1 182 38.5
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-21 110.9 417 22.8
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 5.1e-21 109.4 117 49.6
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 8.8e-21 108.6 73 68.5
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.2e-15 90.1 61 75.4
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 8.8e-13 82.0 620 21.9
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.0e-12 80.9 56 64.3
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 3.7e-11 76.6 399 25.3
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.4e-10 74.7 102 37.3
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 9.1e-10 72.0 238 28.2
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.7e-09 70.5 76 51.3
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 2.7e-09 70.5 112 39.3
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 5.0e-08 66.2 961 20.8
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 8.5e-08 65.5 119 35.3
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 1.1e-07 65.1 77 49.4


User provided reference genes

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