Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 2.7e-121 438.7 231 100.0
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 6.1e-97 357.8 197 93.4
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 1.0e-83 313.9 199 84.9
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 4.1e-77 292.0 201 77.6
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 9.5e-58 227.6 200 62.0
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 1.6e-57 226.9 201 60.7
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 2.3e-56 223.0 198 63.6
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 3.1e-56 222.6 209 59.8
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 3.1e-56 222.6 201 61.7
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 3.1e-56 222.6 201 61.2
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 4.0e-56 222.2 201 62.7
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 8.9e-56 221.1 172 68.0
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 8.9e-56 221.1 201 59.2
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.6e-55 219.5 200 63.0
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 7.5e-55 218.0 200 61.5
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 1.7e-54 216.9 192 63.5
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 1.7e-54 216.9 205 58.5
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 2.2e-54 216.5 200 60.5
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 2.2e-54 216.5 202 61.9
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 2.9e-54 216.1 158 72.8
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 4.9e-54 215.3 215 58.1
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 4.9e-54 215.3 200 62.0
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 1.9e-53 213.4 202 59.4
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 2.4e-53 213.0 204 58.3
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 2.4e-53 213.0 172 66.3
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 3.2e-53 212.6 185 63.8
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 4.1e-53 212.2 196 58.7
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 5.4e-53 211.8 200 60.5
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 7.1e-53 211.5 161 69.6
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 7.1e-53 211.5 200 58.5
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 9.2e-53 211.1 205 58.0
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 9.2e-53 211.1 206 58.7
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 1.6e-52 210.3 156 70.5
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 2.1e-52 209.9 184 62.5
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 2.1e-52 209.9 201 59.7
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 2.1e-52 209.9 208 57.7
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 2.7e-52 209.5 201 59.7
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 2.7e-52 209.5 201 59.7
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 2.7e-52 209.5 203 58.1
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 2.7e-52 209.5 182 62.1
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 3.5e-52 209.1 163 67.5
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 1.0e-51 207.6 177 65.5
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 1.3e-51 207.2 228 56.6
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 2.3e-51 206.5 185 61.1
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 3.9e-51 205.7 199 59.3
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 6.6e-51 204.9 204 57.4
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 8.6e-51 204.5 197 60.9
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 1.9e-50 203.4 188 61.7
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 2.5e-50 203.0 200 58.5
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 2.5e-50 203.0 199 57.8
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 3.3e-50 202.6 204 57.8
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 5.6e-50 201.8 207 56.0
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 5.6e-50 201.8 202 56.4
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 7.3e-50 201.4 157 67.5
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 7.3e-50 201.4 203 55.2
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 1.6e-49 200.3 177 61.0
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 6.2e-49 198.4 197 57.4
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 1.1e-48 197.6 202 55.9
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 1.8e-48 196.8 175 60.0
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 2.4e-48 196.4 191 57.6
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 2.4e-48 196.4 202 55.9
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 6.8e-48 194.9 223 52.5
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 2.0e-47 193.4 175 60.0
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 2.0e-47 193.4 163 58.9
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 3.4e-47 192.6 192 58.9
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 9.9e-47 191.0 222 49.5
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 9.9e-47 191.0 223 52.0
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 1.3e-46 190.7 204 52.9
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 2.2e-46 189.9 206 50.5
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 3.8e-46 189.1 200 52.5
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 3.8e-46 189.1 189 58.7
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 3.8e-46 189.1 176 59.7
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 4.9e-46 188.7 190 57.9
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 4.9e-46 188.7 176 56.8
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 6.4e-46 188.3 222 49.1
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 8.4e-46 188.0 207 51.2
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 8.4e-46 188.0 222 49.1
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 1.1e-45 187.6 200 52.0
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 1.1e-45 187.6 161 59.6
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 3.2e-45 186.0 177 58.8
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 4.2e-45 185.7 207 52.2
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 7.1e-45 184.9 158 62.0
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 9.2e-45 184.5 203 51.7
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 9.2e-45 184.5 203 52.7
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.6e-44 183.7 147 69.4
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.6e-44 183.7 182 56.0
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 2.1e-44 183.3 172 59.3
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 2.7e-44 183.0 192 55.7
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 3.5e-44 182.6 198 54.0
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 1.3e-43 180.6 210 50.0
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 3.9e-43 179.1 161 57.1
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 1.1e-42 177.6 155 61.3
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 3.3e-42 176.0 161 56.5
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.8e-41 172.9 164 57.3
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 2.4e-40 169.9 194 50.5
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 3.4e-39 166.0 170 50.0
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 2.9e-38 162.9 163 51.5
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 3.2e-37 159.5 183 45.4
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 1.6e-36 157.1 201 44.3
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 6.0e-36 155.2 156 50.6
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 5.3e-32 142.1 160 49.4
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 1.8e-27 127.1 187 42.2
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 3.7e-25 119.4 118 52.5
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 4.8e-25 119.0 92 60.9
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 2.6e-23 113.2 185 40.5
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 9.6e-18 94.7 154 36.4
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 4.5e-15 85.9 143 31.5
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.1e-12 77.0 116 46.6
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 4.6e-12 75.9 197 28.4
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 6.0e-12 75.5 86 48.8
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 6.0e-12 75.5 143 29.4
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.3e-11 74.3 192 29.2
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.8e-11 73.9 143 31.5
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 5.1e-11 72.4 145 33.8
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 1.1e-08 64.7 83 45.8
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 1.4e-08 64.3 68 54.4


User provided reference genes

Program Settings