Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 3.6e-124 448.4 241 100.0
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.1e-112 408.3 231 93.5
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.7e-110 402.9 241 88.4
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 4.4e-106 388.3 241 84.6
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 2.2e-105 386.0 241 84.2
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.1e-104 383.6 241 83.4
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.8e-104 382.9 243 84.4
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.2e-104 382.1 241 82.2
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.6e-103 378.3 241 83.0
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 7.8e-103 377.5 241 82.6
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.3e-102 376.7 241 82.2
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 6.6e-102 374.4 241 81.3
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 8.6e-102 374.0 242 81.8
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.5e-101 373.2 241 80.5
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.5e-101 373.2 241 81.7
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.5e-101 373.2 240 81.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 5.6e-101 371.3 241 81.7
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 7.3e-101 370.9 241 81.3
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.2e-100 370.2 242 81.0
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.1e-100 369.4 241 79.7
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 2.8e-100 369.0 241 79.3
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.6e-100 368.6 241 81.7
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 8.0e-100 367.5 242 81.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.4e-99 366.7 242 80.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.0e-99 365.2 242 80.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 5.2e-99 364.8 241 79.7
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.2e-99 364.8 241 78.0
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 6.8e-99 364.4 241 79.7
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 6.8e-99 364.4 241 79.3
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-98 362.8 244 80.3
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.4e-98 362.1 241 78.4
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.7e-97 359.8 242 78.1
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 2.2e-97 359.4 242 77.3
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.7e-97 358.6 242 79.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 6.4e-97 357.8 241 78.0
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.9e-96 356.3 196 97.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 2.4e-96 355.9 241 79.3
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.4e-96 355.9 241 76.8
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.2e-96 355.5 242 77.3
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 4.1e-96 355.1 241 78.0
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.4e-96 354.8 242 76.0
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.6e-95 353.2 244 77.5
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 6.0e-95 351.3 242 76.0
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 6.0e-95 351.3 242 75.6
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.8e-95 350.9 241 74.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.0e-94 350.5 241 75.9
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.0e-94 350.5 242 75.2
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.3e-94 350.1 242 75.2
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.7e-94 349.7 220 83.2
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.3e-94 349.4 244 76.6
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.0e-94 349.0 241 75.9
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 3.9e-94 348.6 242 76.9
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 8.6e-94 347.4 244 77.0
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.9e-93 346.3 242 76.0
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 4.3e-93 345.1 241 74.3
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 9.5e-93 344.0 241 75.5
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.5e-93 344.0 282 67.0
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.6e-92 343.2 242 74.8
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 2.1e-92 342.8 237 74.7
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.8e-92 342.4 241 73.0
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.8e-92 342.4 241 77.6
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 8.1e-92 340.9 243 74.9
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 8.1e-92 340.9 242 75.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.3e-91 339.3 245 75.5
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 4.0e-91 338.6 238 76.1
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.0e-91 338.6 239 76.2
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 4.0e-91 338.6 239 76.6
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 4.0e-91 338.6 241 73.4
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 8.9e-91 337.4 242 74.8
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 5.8e-90 334.7 270 66.7
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.7e-89 332.0 243 73.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 4.9e-89 331.6 221 78.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 8.3e-89 330.9 241 70.5
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.1e-88 330.5 241 71.0
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-88 330.1 241 70.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 4.1e-88 328.6 222 78.4
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 69.7
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 5.4e-88 328.2 241 69.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 7.1e-88 327.8 241 70.1
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 7.1e-88 327.8 241 70.1
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 70.1
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.2e-87 327.0 241 69.3
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.1e-87 326.2 290 62.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.7e-87 325.9 245 72.2
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.5e-87 325.5 241 68.9
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.5e-87 325.5 244 72.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 6.0e-87 324.7 243 74.1
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 7.8e-87 324.3 241 68.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.3e-86 323.6 241 68.5
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.3e-86 323.6 242 69.0
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.0e-86 322.4 226 75.2
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 6.6e-86 321.2 241 68.5
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 8.6e-86 320.9 196 84.7
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.5e-85 320.1 223 74.9
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.5e-85 320.1 242 68.6
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.5e-85 320.1 242 68.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 72.0
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.9e-85 319.7 278 65.5
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.9e-85 319.7 197 84.8
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 4.3e-85 318.5 241 67.6
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 7.3e-85 317.8 246 67.5
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 228 72.8
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 7.3e-85 317.8 243 69.1
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.2e-84 317.0 281 64.4
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.6e-84 316.6 244 68.4
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.8e-84 315.8 196 82.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 3.6e-84 315.5 198 81.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 4.7e-84 315.1 246 70.3
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.2e-84 314.7 244 68.4
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.8e-83 313.2 243 69.5
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 3.1e-83 312.4 196 82.7
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.2e-82 310.5 243 68.7
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.5e-82 310.1 243 68.3
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.9e-81 305.8 287 62.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.4e-81 304.7 258 65.5
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 8.4e-81 304.3 196 81.6
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 4.1e-80 302.0 231 70.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.6e-79 300.1 199 78.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-79 299.7 199 78.9
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.7e-79 299.3 199 78.4
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.7e-79 299.3 244 64.8
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.5e-79 298.9 258 64.7
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.5e-79 298.9 244 64.8
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 6.0e-79 298.1 196 78.1
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.3e-78 296.2 199 77.9
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.1e-76 289.7 240 66.2
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.4e-73 277.7 179 81.0
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.7e-71 272.7 196 69.4
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 5.6e-69 265.0 175 78.3
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.3e-69 264.6 220 67.7
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 8.1e-68 261.2 242 60.3
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 7.1e-64 248.1 188 68.1
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.6e-61 238.4 196 67.3
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.1e-56 224.2 135 85.2
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.1e-55 219.9 223 55.6
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 3.0e-54 216.1 155 72.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 7.9e-47 191.4 155 63.2
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.8e-43 180.3 130 72.3
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 5.0e-41 172.2 149 63.1
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.6e-39 167.2 112 76.8
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.9e-38 162.5 169 56.2
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.4e-32 144.1 232 45.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 4.2e-32 142.5 198 42.4
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 5.5e-32 142.1 223 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 2.3e-30 136.7 239 35.6
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.1e-27 126.3 209 36.8
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.5e-24 116.7 236 38.6
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 6.7e-22 108.6 213 34.3
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.0e-21 107.1 215 34.9
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 7.4e-21 105.1 99 58.6
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.1e-19 101.3 77 68.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.6e-18 97.4 177 44.1
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 8.5e-17 91.7 63 76.2
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 8.8e-14 81.6 85 56.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.1e-11 73.2 64 60.9
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.2e-10 71.2 213 29.1
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.4e-06 57.8 47 68.1
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.4e-06 57.8 40 77.5


User provided reference genes

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