Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 2.6e-159 565.5 309 100.0
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 3.0e-83 312.8 163 96.3
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.2e-76 290.8 165 89.1
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 7.0e-64 248.4 163 77.9
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.6e-63 247.3 153 80.4
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 5.9e-63 245.4 164 75.6
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 5.0e-62 242.3 164 75.0
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 5.0e-62 242.3 164 75.0
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.1e-61 241.1 164 74.4
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 1.5e-61 240.7 154 78.6
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.5e-61 240.0 164 74.4
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 3.2e-61 239.6 169 73.4
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 4.2e-61 239.2 165 73.3
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 4.2e-61 239.2 164 73.8
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 4.2e-61 239.2 150 76.7
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 5.5e-61 238.8 166 74.1
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 1.6e-60 237.3 150 78.0
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 2.7e-60 236.5 164 72.6
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 3.6e-60 236.1 158 75.3
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 3.6e-60 236.1 163 71.8
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 4.7e-60 235.7 164 75.6
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 8.0e-60 235.0 150 76.7
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 1.0e-59 234.6 158 74.7
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.0e-59 234.6 166 71.1
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 2.3e-59 233.4 165 72.1
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.0e-59 232.6 159 74.2
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.2e-59 232.3 159 74.2
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.2e-59 232.3 159 74.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 8.8e-59 231.5 164 73.8
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.5e-58 230.7 168 72.6
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.5e-58 230.7 168 72.6
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 3.4e-58 229.6 166 72.9
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 5.7e-58 228.8 151 76.8
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 7.5e-58 228.4 152 76.3
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 7.5e-58 228.4 153 73.9
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 7.5e-58 228.4 163 70.6
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 7.5e-58 228.4 168 70.8
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 9.8e-58 228.0 151 76.8
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.7e-57 227.3 145 76.6
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.8e-57 226.5 154 73.4
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 2.8e-57 226.5 155 72.3
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 3.7e-57 226.1 151 73.5
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 3.7e-57 226.1 150 75.3
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.8e-57 225.7 155 74.8
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 8.3e-57 224.9 153 73.9
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 1.4e-56 224.2 168 68.5
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 1.4e-56 224.2 151 74.8
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 3.1e-56 223.0 177 65.0
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 5.4e-56 222.2 168 69.6
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 7.0e-56 221.9 170 70.6
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.2e-55 221.1 150 72.7
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.2e-55 221.1 150 72.7
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.2e-55 221.1 150 72.7
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 2.0e-55 220.3 156 71.8
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 2.7e-55 219.9 151 72.2
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 3.5e-55 219.5 167 70.1
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 4.5e-55 219.2 151 72.8
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 7.7e-55 218.4 167 70.1
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 1.0e-54 218.0 155 74.8
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 1.0e-54 218.0 156 67.9
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.3e-54 217.6 164 67.7
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.3e-54 217.6 153 70.6
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 1.7e-54 217.2 142 74.6
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 2.2e-54 216.9 151 72.8
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 2.2e-54 216.9 168 70.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.0e-54 215.7 163 68.1
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 6.5e-54 215.3 153 69.9
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 8.5e-54 214.9 162 66.7
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 8.5e-54 214.9 171 66.1
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.5e-53 214.2 154 70.8
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 4.2e-53 212.6 154 66.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.1e-52 210.3 151 69.5
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 4.7e-52 209.1 165 64.8
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 4.7e-52 209.1 170 66.5
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 1.0e-51 208.0 174 67.8
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 1.0e-51 208.0 174 67.8
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 1.0e-51 208.0 174 67.8
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 1.8e-51 207.2 172 67.4
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 2.3e-51 206.8 177 63.8
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.0e-51 206.5 173 65.9
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 3.0e-51 206.5 165 63.6
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 4.0e-51 206.1 174 67.2
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.0e-51 206.1 159 66.7
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.0e-51 206.1 159 66.7
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 5.2e-51 205.7 172 66.9
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 6.8e-51 205.3 177 61.6
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 1.2e-50 204.5 152 71.1
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 3.4e-50 203.0 148 68.2
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 5.7e-50 202.2 178 64.0
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 7.5e-50 201.8 174 64.4
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 7.5e-50 201.8 172 65.1
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 9.8e-50 201.4 166 66.3
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.7e-49 200.7 176 63.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.7e-49 200.7 176 63.6
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.7e-49 200.7 151 68.2
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 1.4e-48 197.6 176 63.6
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 7.0e-48 195.3 156 61.5
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.5e-45 187.6 154 64.9
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 1.1e-40 171.4 139 66.9
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.8e-40 170.6 152 55.3
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 1.2e-39 167.9 112 72.3
MELO3C008028.2 Cucumis melo HOM05D039212 ORTHO05D034748 5.0e-38 162.5 175 61.7
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 5.0e-38 162.5 110 71.8
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.8e-35 154.1 158 48.7
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.2e-34 151.4 152 51.3
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 7.0e-32 142.1 146 49.3
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 1.1e-29 134.8 115 60.9
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.6e-29 132.5 158 48.1
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.1e-19 100.1 156 41.0
ClCG01G015690 Citrullus lanatus HOM05D039212 ORTHO05D034748 5.2e-19 99.4 184 47.3
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 3.4e-18 96.7 73 64.4
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 4.4e-18 96.3 97 51.5
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 7.6e-18 95.5 63 71.4
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.1e-11 73.6 106 41.5
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.0e-11 73.2 69 55.1
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 5.2e-11 72.8 56 73.2
Sed0020333 Sechium edule HOM05D039212 ORTHO05D034748 4.6e-07 59.7 178 38.2
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.6e-06 55.8 33 75.8


User provided reference genes

Program Settings