Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 9.2e-167 590.1 291 100.0
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.1e-162 576.6 291 96.2
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.9e-151 539.3 291 90.0
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.6e-142 509.6 295 87.5
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 3.4e-113 412.1 281 72.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.3e-112 410.2 291 69.8
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.3e-112 410.2 288 69.8
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 3.0e-109 399.1 286 70.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 3.0e-109 399.1 280 70.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 3.9e-109 398.7 288 68.8
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.0e-108 396.4 289 68.9
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.5e-108 396.0 281 70.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 4.8e-107 391.7 283 68.9
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.1e-106 390.6 283 67.5
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.1e-106 389.0 284 67.3
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 4.1e-106 388.7 289 67.1
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 4.5e-105 385.2 281 69.0
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.0e-104 384.0 289 67.1
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.0e-104 384.0 288 66.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.7e-104 383.3 289 67.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 1.7e-104 383.3 281 68.3
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.2e-104 382.9 280 70.7
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 5.0e-104 381.7 289 67.1
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.9e-103 379.8 288 65.6
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.5e-103 379.4 289 67.1
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.5e-103 378.3 286 66.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 9.4e-103 377.5 286 66.4
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 9.4e-103 377.5 280 67.9
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.2e-102 377.1 283 66.1
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.2e-102 377.1 280 67.9
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.1e-102 376.3 286 65.7
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.8e-101 373.2 266 70.3
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.3e-101 372.9 228 80.3
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 2.3e-101 372.9 284 66.9
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.0e-101 372.5 289 65.4
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 6.7e-101 371.3 279 67.7
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 8.8e-101 370.9 282 64.9
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.5e-100 370.2 280 65.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.0e-100 369.8 288 65.3
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 5.7e-100 368.2 279 67.4
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 7.4e-100 367.9 306 60.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.8e-99 365.9 289 63.7
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 6.3e-99 364.8 283 65.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.3e-99 364.8 292 63.7
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.4e-98 362.8 285 61.4
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.0e-98 361.3 285 63.2
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.0e-98 361.3 265 69.1
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 4.5e-97 358.6 291 63.6
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.0e-96 357.5 312 59.9
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.7e-96 356.7 249 69.9
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.7e-96 356.7 280 64.3
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 6.5e-96 354.8 255 68.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.4e-95 353.6 282 64.5
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 4.2e-95 352.1 280 63.9
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.1e-94 349.7 286 63.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.1e-94 348.2 280 62.1
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 6.1e-94 348.2 289 61.2
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 8.0e-94 347.8 250 70.8
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.0e-93 347.4 273 64.8
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.0e-93 347.4 282 63.8
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.4e-93 347.1 249 69.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.4e-93 347.1 289 61.6
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 2.3e-93 346.3 280 62.1
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.8e-93 344.4 292 61.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.8e-93 344.4 290 62.8
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 2.0e-92 343.2 336 57.4
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.4e-92 342.0 280 61.8
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 7.4e-92 341.3 287 62.0
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 7.4e-92 341.3 227 72.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 9.7e-92 340.9 223 72.2
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 2.2e-91 339.7 284 63.0
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.1e-90 335.9 273 61.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.1e-90 335.9 250 64.8
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 4.1e-90 335.5 236 70.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 9.1e-90 334.3 224 70.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.2e-89 334.0 222 70.7
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.6e-89 333.6 226 70.4
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.0e-89 333.2 251 66.1
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.6e-89 332.8 225 71.1
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 7.7e-89 331.3 217 72.4
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 1.3e-88 330.5 310 57.4
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.5e-87 327.0 315 57.1
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.9e-87 326.6 249 65.9
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 2.5e-87 326.2 288 60.4
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 7.2e-87 324.7 249 66.7
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 3.6e-86 322.4 238 67.2
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.1e-86 321.6 249 64.7
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.3e-85 319.7 249 65.5
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 8.8e-85 317.8 254 65.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.6e-84 316.2 287 56.1
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.3e-84 315.8 251 65.3
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 7.5e-84 314.7 222 69.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.8e-82 310.1 227 67.4
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.1e-82 309.3 337 53.7
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 4.5e-81 305.4 337 52.2
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.0e-80 304.3 289 57.1
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.0e-80 304.3 185 80.0
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.7e-80 303.5 262 59.9
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.7e-78 296.2 227 65.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.2e-76 290.8 260 58.1
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 5.7e-76 288.5 219 63.0
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 5.7e-76 288.5 219 63.0
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 2.8e-75 286.2 216 64.8
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.7e-75 285.8 252 61.5
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 8.3e-75 284.6 209 63.6
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 8.3e-75 284.6 209 63.6
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.1e-71 274.2 170 76.5
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 3.6e-70 269.2 169 75.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.0e-68 263.5 167 76.6
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 5.0e-64 248.8 158 75.3
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.5e-63 246.5 271 52.0
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 5.4e-58 228.8 246 45.9
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.0e-57 225.3 144 75.0
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.3e-55 219.5 136 77.9
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 9.5e-55 218.0 209 47.8
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.8e-53 213.8 211 46.4
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-52 210.7 150 69.3
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 3.4e-52 209.5 213 45.1
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.1e-49 200.3 247 48.6
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.3e-45 186.8 198 45.5
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 4.9e-43 179.1 107 79.4
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-41 174.5 106 76.4
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 2.3e-32 143.7 130 54.6
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.3e-27 127.9 188 34.0
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 8.7e-24 115.2 80 66.2
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.9e-23 114.0 129 49.6
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 7.3e-23 112.1 80 63.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 6.2e-22 109.0 243 29.6
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 5.3e-21 105.9 81 56.8
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 5.8e-20 102.4 98 57.1
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.4e-18 97.8 119 47.1
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.9e-18 97.4 69 63.8
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.3e-16 91.3 82 56.1
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 4.5e-12 76.3 47 74.5
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 7.9e-09 65.5 45 71.1
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.0e-08 65.1 37 75.7
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.9e-07 60.8 49 65.3
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 9.6e-07 58.5 39 66.7


User provided reference genes

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