Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G041380 Cucumis sativus L. HOM05D000519 ORTHO05D000959 6.3e-60 233.8 109 100.0
CsaV3_7G013770 Cucumis sativus L. HOM05D000519 ORTHO05D000959 2.3e-46 188.7 105 83.8
CsaV3_7G013810 Cucumis sativus L. HOM05D000519 ORTHO05D000959 2.3e-46 188.7 105 83.8
CsaV3_6G041370 Cucumis sativus L. HOM05D000519 ORTHO05D000959 9.1e-35 150.2 87 81.6
CsaV3_6G041410 Cucumis sativus L. HOM05D000519 ORTHO05D000959 1.0e-33 146.7 137 57.7
CsaV3_7G013800 Cucumis sativus L. HOM05D000519 ORTHO05D000959 4.7e-31 137.9 87 74.7
CsaV3_7G013790 Cucumis sativus L. HOM05D000519 ORTHO05D000959 3.0e-30 135.2 87 74.7
CsaV3_6G041420 Cucumis sativus L. HOM05D000519 ORTHO05D000959 4.0e-30 134.8 84 76.2
CsaV3_7G013760 Cucumis sativus L. HOM05D000519 ORTHO05D000959 4.0e-30 134.8 87 74.7
CsaV3_7G013780 Cucumis sativus L. HOM05D000519 ORTHO05D000959 1.5e-29 132.9 87 73.6
CsaV3_6G041390 Cucumis sativus L. HOM05D000519 ORTHO05D000959 7.5e-29 130.6 91 69.2
CsaV3_6G052130 Cucumis sativus L. HOM05D000060 ORTHO05D000959 2.6e-21 105.5 78 59.0
MELO3C033110.2 Cucumis melo HOM05D000519 ORTHO05D000959 2.8e-20 102.1 81 58.0
ClCG04G010270 Citrullus lanatus HOM05D000519 ORTHO05D034688 9.2e-19 97.1 79 55.7
CsaV3_6G041440 Cucumis sativus L. HOM05D000519 ORTHO05D174392 2.5e-16 89.0 78 56.4
CsaV3_5G014820 Cucumis sativus L. HOM05D000519 ORTHO05D000959 3.0e-14 82.0 78 47.4
MELO3C008183.2 Cucumis melo HOM05D000519 ORTHO05D000959 6.8e-14 80.9 88 46.6
MELO3C008065.2 Cucumis melo HOM05D000519 ORTHO05D000959 2.0e-13 79.3 85 44.7
CsaV3_6G041550 Cucumis sativus L. HOM05D000519 ORTHO05D000959 9.8e-13 77.0 83 45.8
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 4.9e-12 74.7 97 45.4
CsaV3_7G013890 Cucumis sativus L. HOM05D000519 ORTHO05D000959 4.1e-11 71.6 89 42.7
Sed0017482 Sechium edule HOM05D000519 ORTHO05D000959 4.1e-11 71.6 82 45.1
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 4.1e-11 71.6 81 42.0
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 5.4e-11 71.2 94 41.5
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 5.4e-11 71.2 79 45.6
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 1.6e-10 69.7 80 41.2
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 2.7e-10 68.9 84 46.4
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 3.5e-10 68.6 82 41.5
MELO3C027030.2 Cucumis melo HOM05D000519 ORTHO05D000959 4.6e-10 68.2 89 39.3
CsaV3_6G041540 Cucumis sativus L. HOM05D000519 ORTHO05D034688 6.0e-10 67.8 88 43.2
HPP92_014273 Vanilla planifolia HOM05D000519 ORTHO05D000959 6.0e-10 67.8 84 42.9
HPP92_024483 Vanilla planifolia HOM05D000519 ORTHO05D000959 6.0e-10 67.8 84 44.0
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 7.8e-10 67.4 78 44.9
MELO3C008066.2 Cucumis melo HOM05D000519 ORTHO05D000959 1.0e-09 67.0 84 39.3
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 1.0e-09 67.0 79 44.3
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 1.3e-09 66.6 83 47.0
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 1.3e-09 66.6 83 41.0
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 1.3e-09 66.6 94 39.4
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 2.3e-09 65.9 85 43.5
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 2.3e-09 65.9 81 45.7
Duzib205G0308 Durio zibethinus HOM05D000519 ORTHO05D000959 2.3e-09 65.9 86 40.7
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 2.3e-09 65.9 82 43.9
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 2.3e-09 65.9 86 38.4
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 3.0e-09 65.5 95 38.9
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 3.9e-09 65.1 83 44.6
EL10Ac8g20214 Beta vulgaris HOM05D000519 ORTHO05D000959 3.9e-09 65.1 80 41.2
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 3.9e-09 65.1 81 39.5
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.9e-09 65.1 82 43.9
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 3.9e-09 65.1 78 44.9
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 3.9e-09 65.1 79 44.3
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 5.0e-09 64.7 100 41.0
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 6.6e-09 64.3 81 43.2
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 6.6e-09 64.3 86 41.9
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 8.6e-09 63.9 82 42.7
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 8.6e-09 63.9 81 43.2
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 8.6e-09 63.9 81 43.2
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 8.6e-09 63.9 84 40.5
Psat1g175600 Pisum sativum HOM05D000519 ORTHO05D000959 8.6e-09 63.9 77 41.6
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 8.6e-09 63.9 82 40.2
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 1.1e-08 63.5 79 41.8
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.1e-08 63.5 77 44.2
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.1e-08 63.5 82 41.5
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 1.1e-08 63.5 78 43.6
Sed0013622 Sechium edule HOM05D000519 ORTHO05D000959 1.1e-08 63.5 98 31.6
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 1.1e-08 63.5 81 43.2
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.5e-08 63.2 81 42.0
QL04p088219 Quercus lobata HOM05D000519 ORTHO05D000959 1.5e-08 63.2 81 39.5
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.9e-08 62.8 82 40.2
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-08 62.8 81 43.2
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.5e-08 62.4 80 41.2
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 2.5e-08 62.4 83 37.3
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 2.5e-08 62.4 83 41.0
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 2.5e-08 62.4 76 43.4
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 2.5e-08 62.4 80 43.8
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 2.5e-08 62.4 94 38.3
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 2.5e-08 62.4 83 42.2
HPP92_024485 Vanilla planifolia HOM05D000519 ORTHO05D000959 2.5e-08 62.4 87 37.9
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 3.3e-08 62.0 103 37.9
Ah.09g234140 Amaranthus hybridus HOM05D000519 ORTHO05D000959 3.3e-08 62.0 81 40.7
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 3.3e-08 62.0 77 41.6
MELO3C024605.2 Cucumis melo HOM05D000519 ORTHO05D000959 3.3e-08 62.0 73 45.2
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 3.3e-08 62.0 79 41.8
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 3.3e-08 62.0 85 37.6
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 3.3e-08 62.0 77 42.9
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 3.3e-08 62.0 80 43.8
arahy.Tifrunner.gnm1.ann1.4ZS9PZ Arachis hypogaea HOM05D000519 ORTHO05D000959 4.3e-08 61.6 66 48.5
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 4.3e-08 61.6 82 41.5
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 4.3e-08 61.6 86 41.9
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.3e-08 61.6 80 38.8
CsaV3_6G041300 Cucumis sativus L. HOM05D000519 ORTHO05D000959 5.6e-08 61.2 89 36.0
CsaV3_7G013920 Cucumis sativus L. HOM05D000519 ORTHO05D000959 5.6e-08 61.2 89 36.0
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.6e-08 61.2 80 37.5
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 7.3e-08 60.8 82 41.5
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 7.3e-08 60.8 80 40.0
FAN11G3787 Fragaria x ananassa HOM05D000519 ORTHO05D000959 7.3e-08 60.8 80 40.0
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 7.3e-08 60.8 80 40.0
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 7.3e-08 60.8 82 41.5
FAN25G0271 Fragaria x ananassa HOM05D000519 ORTHO05D000959 9.5e-08 60.5 80 40.0
Eucgr.E03923 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.2e-07 60.1 86 37.2
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.2e-07 60.1 82 37.8
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.2e-07 60.1 82 37.8
QL04p088239 Quercus lobata HOM05D000519 ORTHO05D000959 1.2e-07 60.1 82 39.0
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 1.6e-07 59.7 84 39.3
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 1.6e-07 59.7 81 39.5
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 1.6e-07 59.7 77 42.9
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 2.1e-07 59.3 100 38.0
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 2.1e-07 59.3 79 39.2
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.8e-07 58.9 84 39.3
BcaC02g10392 Brassica carinata HOM05D000519 ORTHO05D000959 2.8e-07 58.9 84 38.1
C04p29440 Brassica napus HOM05D000519 ORTHO05D000959 2.8e-07 58.9 84 38.1
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 2.8e-07 58.9 81 40.7
PGR042G1719 Punica granatum HOM05D000519 ORTHO05D000959 2.8e-07 58.9 85 38.8
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 2.8e-07 58.9 79 39.2
Ah.09g234210 Amaranthus hybridus HOM05D000519 ORTHO05D000959 3.6e-07 58.5 87 35.6
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 3.6e-07 58.5 81 40.7
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 3.6e-07 58.5 81 40.7
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 3.6e-07 58.5 81 40.7
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.6e-07 58.5 78 39.7
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 3.6e-07 58.5 87 36.8
HPP92_014276 Vanilla planifolia HOM05D000519 ORTHO05D000959 3.6e-07 58.5 81 37.0
HPP92_024487 Vanilla planifolia HOM05D000519 ORTHO05D000959 3.6e-07 58.5 81 37.0
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 4.7e-07 58.2 79 41.8
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 4.7e-07 58.2 86 33.7
ClCG09G021860 Citrullus lanatus HOM05D000519 ORTHO05D000959 6.2e-07 57.8 96 33.3
Thecc.03G313400 Theobroma cacao HOM05D000519 ORTHO05D000959 6.2e-07 57.8 99 36.4
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 8.0e-07 57.4 78 39.7
AUR62012807 Chenopodium quinoa HOM05D000519 ORTHO05D000959 8.0e-07 57.4 94 34.0
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 8.0e-07 57.4 82 36.6
CDE07G0061 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 1.1e-06 57.0 79 36.7
Eucgr.E03920 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.1e-06 57.0 84 35.7
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 1.1e-06 57.0 81 39.5
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 1.1e-06 57.0 88 36.4
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 1.1e-06 57.0 101 35.6
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 1.1e-06 57.0 82 40.2
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 1.1e-06 57.0 87 33.3
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 1.1e-06 57.0 79 39.2
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 1.4e-06 56.6 98 37.8
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 1.4e-06 56.6 111 35.1
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 1.4e-06 56.6 98 37.8
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 1.4e-06 56.6 84 34.5
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 1.4e-06 56.6 84 34.5
AUR62021847 Chenopodium quinoa HOM05D000519 ORTHO05D000959 1.4e-06 56.6 84 39.3
MD05G1359200 Malus domestica HOM05D000519 ORTHO05D000959 1.4e-06 56.6 87 34.5
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.8e-06 56.2 96 36.5
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 1.8e-06 56.2 93 35.5
AUR62012808 Chenopodium quinoa HOM05D000519 ORTHO05D000959 1.8e-06 56.2 79 35.4
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.8e-06 56.2 82 40.2
MELO3C027975.2 Cucumis melo HOM05D000519 ORTHO05D000959 1.8e-06 56.2 46 63.0
DCAR_004907 Daucus carota HOM05D000519 ORTHO05D000959 1.8e-06 56.2 84 32.1
HPP92_006095 Vanilla planifolia HOM05D000519 ORTHO05D000959 1.8e-06 56.2 83 37.3
Eucgr.E03921 Eucalyptus grandis HOM05D000519 ORTHO05D000959 2.3e-06 55.8 86 36.0
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 2.3e-06 55.8 82 37.8
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 2.3e-06 55.8 80 38.8
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 2.3e-06 55.8 99 35.4
ATR0923G001 Amborella trichopoda HOM05D000519 ORTHO05D000959 3.1e-06 55.5 80 35.0
MSTRG.7159 Avicennia marina HOM05D000519 ORTHO05D000959 3.1e-06 55.5 85 37.6
Eucgr.E03919 Eucalyptus grandis HOM05D000519 ORTHO05D000959 3.1e-06 55.5 84 34.5
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 3.1e-06 55.5 99 35.4
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 4.0e-06 55.1 98 37.8
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 4.0e-06 55.1 98 37.8
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 4.0e-06 55.1 98 37.8
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 4.0e-06 55.1 88 39.8
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 4.0e-06 55.1 82 37.8
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 4.0e-06 55.1 88 37.5
Zm00001eb021060 Zea mays HOM05D000519 ORTHO05D000959 4.0e-06 55.1 79 36.7
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 5.2e-06 54.7 93 33.3
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 5.2e-06 54.7 93 33.3
CAN.G696.24 Capsicum annuum HOM05D000519 ORTHO05D000959 5.2e-06 54.7 82 39.0
CAN.G696.25 Capsicum annuum HOM05D000519 ORTHO05D000959 5.2e-06 54.7 82 39.0
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 5.2e-06 54.7 78 34.6
AUR62021846 Chenopodium quinoa HOM05D000519 ORTHO05D000959 5.2e-06 54.7 94 34.0
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 5.2e-06 54.7 85 35.3
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 5.2e-06 54.7 83 37.3
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 5.2e-06 54.7 81 38.3
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 6.8e-06 54.3 79 38.0
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 8.9e-06 53.9 93 36.6
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 8.9e-06 53.9 93 36.6
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 8.9e-06 53.9 85 34.1
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 8.9e-06 53.9 83 34.9


User provided reference genes

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