Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 4.1e-198 694.5 343 100.0
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 2.5e-147 525.8 310 84.2
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 2.6e-128 462.6 263 83.7
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 1.6e-114 416.8 337 59.6
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 4.0e-113 412.1 323 57.3
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 4.5e-112 408.7 296 62.2
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 5.5e-110 401.7 299 60.2
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.1e-109 399.8 331 55.3
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 3.3e-107 392.5 337 54.0
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.3e-107 392.5 325 55.1
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 4.3e-107 392.1 295 60.0
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 7.4e-107 391.3 295 59.3
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 2.8e-106 389.4 334 55.7
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 3.7e-106 389.0 294 59.9
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 8.2e-106 387.9 334 52.4
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.4e-105 387.1 344 55.2
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 3.1e-105 386.0 298 57.7
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 5.3e-105 385.2 324 55.6
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.2e-104 384.0 293 59.0
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 1.2e-104 384.0 297 57.6
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 2.0e-104 383.3 300 59.3
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 2.6e-104 382.9 299 57.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 4.5e-104 382.1 319 56.1
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 5.9e-104 381.7 298 56.7
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 5.9e-104 381.7 295 56.9
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 7.7e-104 381.3 327 54.1
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 1.0e-103 380.9 307 56.7
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 1.3e-103 380.6 299 56.9
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 2.2e-103 379.8 342 53.5
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 1.4e-102 377.1 334 53.3
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 5.5e-102 375.2 332 53.6
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 7.2e-102 374.8 337 54.3
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 3.6e-101 372.5 308 55.8
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 3.6e-101 372.5 298 56.4
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 1.4e-100 370.5 313 52.1
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 1.5e-99 367.1 299 55.9
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 2.5e-99 366.3 299 55.9
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 2.5e-99 366.3 334 52.7
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 2.5e-99 366.3 300 53.0
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 4.3e-99 365.5 299 55.5
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 7.4e-99 364.8 299 54.2
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 9.7e-99 364.4 295 57.3
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.7e-98 363.6 299 55.2
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 2.2e-98 363.2 299 56.2
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 4.8e-98 362.1 298 55.4
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 6.3e-98 361.7 342 62.3
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 4.1e-97 359.0 309 53.1
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 4.1e-97 359.0 308 52.6
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 5.3e-97 358.6 299 54.5
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 6.9e-97 358.2 299 54.2
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 6.9e-97 358.2 342 50.0
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 9.1e-97 357.8 283 58.0
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 3.4e-96 355.9 282 56.0
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.5e-96 355.5 298 54.0
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 5.9e-96 355.1 299 53.2
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.0e-95 354.4 299 52.8
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.0e-95 354.4 339 51.0
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 2.2e-95 353.2 299 53.8
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 8.5e-95 351.3 300 54.3
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 8.5e-95 351.3 298 54.0
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.1e-94 350.9 282 55.7
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 2.5e-94 349.7 303 52.8
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 4.7e-93 345.5 330 49.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 2.3e-92 343.2 273 57.1
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 5.1e-92 342.0 327 51.1
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 6.7e-92 341.7 291 54.0
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.1e-91 340.9 279 53.4
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 4.4e-91 339.0 320 49.7
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 8.2e-90 334.7 328 49.7
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 4.1e-89 332.4 328 48.5
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 5.3e-89 332.0 289 55.0
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 9.1e-89 331.3 281 53.0
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 1.2e-88 330.9 254 58.3
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 4.5e-88 328.9 298 46.3
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.7e-83 312.0 390 41.0
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 5.7e-83 312.0 464 37.7
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 3.1e-81 306.2 347 45.8
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.0e-79 301.2 281 48.4
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 5.5e-78 295.4 328 45.1
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.2e-77 294.3 335 41.8
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.4e-76 290.8 256 52.7
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 5.2e-76 288.9 239 55.6
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 8.8e-76 288.1 219 62.1
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 7.5e-75 285.0 237 52.7
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 9.7e-75 284.6 235 53.2
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.4e-73 280.0 235 53.2
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 5.9e-72 275.4 249 51.8
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 6.5e-71 271.9 335 44.5
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.7e-69 266.5 322 43.5
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 6.1e-69 265.4 202 59.4
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.4e-65 254.2 203 57.6
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.6e-64 250.8 285 41.8
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.4e-60 237.7 210 50.0
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.3e-58 231.1 309 37.2
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.9e-55 219.9 326 41.1
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.0e-47 194.9 195 49.2
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 5.0e-47 192.6 195 49.2
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 1.9e-46 190.7 145 59.3
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.9e-46 190.7 168 51.8
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 1.2e-45 188.0 445 31.2
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.2e-43 181.4 167 50.9
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 7.1e-41 172.2 153 51.0
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 4.6e-40 169.5 298 32.6
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 3.0e-39 166.8 250 34.8
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 5.1e-39 166.0 174 46.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 2.4e-33 147.1 128 51.6
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.8e-32 142.1 104 57.7
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.5e-30 137.1 141 54.6
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.6e-27 127.1 88 60.2
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 9.9e-27 125.2 271 30.6
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 3.2e-25 120.2 341 27.9
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 2.1e-24 117.5 96 50.0
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 4.3e-22 109.8 84 54.8
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.6e-21 107.8 289 28.4
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 5.8e-19 99.4 76 52.6
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.4e-17 94.7 71 53.5
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 1.4e-17 94.7 61 62.3
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 1.3e-10 71.6 47 66.0
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 1.9e-06 57.8 52 50.0


User provided reference genes

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