Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G040220 Cucumis sativus L. HOM05D001588 ORTHO05D173127 8.3e-35 149.8 76 100.0
ClCG04G009590 Citrullus lanatus HOM05D001588 ORTHO05D002975 1.6e-14 82.4 62 74.2
Sed0008569 Sechium edule HOM05D001588 ORTHO05D002975 4.1e-10 67.8 64 60.9
Sed0013024 Sechium edule HOM05D001588 ORTHO05D002975 4.1e-10 67.8 64 60.9
Sed0011316 Sechium edule HOM05D001588 ORTHO05D002975 7.8e-09 63.5 64 57.8
CsaV3_6G040200 Cucumis sativus L. HOM05D001588 ORTHO05D002975 1.7e-08 62.4 74 50.0
Dinv35843 Davidia involucrata HOM05D001588 ORTHO05D002975 3.0e-08 61.6 73 49.3
EL10Ac7g16729 Beta vulgaris HOM05D001588 ORTHO05D002975 3.9e-08 61.2 74 45.9
Oeu031870.1 Olea europaea HOM05D001588 ORTHO05D002975 6.6e-08 60.5 70 48.6
CSS0010158 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.1e-07 59.7 64 50.0
CSS0025803 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D002975 1.1e-07 59.7 64 50.0
TAR623G1568 Trochodendron aralioides HOM05D001588 ORTHO05D002975 1.9e-07 58.9 70 48.6
Nitab4.5_0000132g0410 Nicotiana tabacum HOM05D001588 ORTHO05D002975 2.5e-07 58.5 70 45.7
Rhsim04G0137800 Rhododendron simsii HOM05D001588 ORTHO05D002975 3.3e-07 58.2 61 50.8
RhsimUnG0231900 Rhododendron simsii HOM05D001588 ORTHO05D002975 3.3e-07 58.2 61 50.8
vmacro08808 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 3.3e-07 58.2 64 48.4
vmacro11209 Vaccinium macrocarpon HOM05D001588 ORTHO05D002975 3.3e-07 58.2 64 48.4
Hma1.2p1_0564F.1_g179110 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 4.3e-07 57.8 62 51.6
Sc20g0005880 Simmondsia chinensis HOM05D001588 ORTHO05D002975 4.3e-07 57.8 62 48.4
Solyc10g083760.3 Solanum lycopersicum HOM05D001588 ORTHO05D002975 4.3e-07 57.8 70 45.7
Sopen10g033220 Solanum pennellii HOM05D001588 ORTHO05D002975 4.3e-07 57.8 70 45.7
PGSC0003DMG400028273 Solanum tuberosum HOM05D001588 ORTHO05D002975 4.3e-07 57.8 70 45.7
THA.LOC104823221 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 4.3e-07 57.8 63 47.6
BcaB03g11575 Brassica carinata HOM05D001588 ORTHO05D002975 5.6e-07 57.4 61 50.8
BcaC01g04258 Brassica carinata HOM05D001588 ORTHO05D002975 5.6e-07 57.4 61 50.8
A03p35710 Brassica napus HOM05D001588 ORTHO05D002975 5.6e-07 57.4 61 50.8
BolC3t16609H Brassica oleracea HOM05D001588 ORTHO05D002975 5.6e-07 57.4 61 50.8
BraA03t12745Z Brassica rapa HOM05D001588 ORTHO05D002975 5.6e-07 57.4 61 50.8
Hma1.2p1_1578F.1_g291790 Hydrangea macrophylla HOM05D001588 ORTHO05D002975 5.6e-07 57.4 70 47.1
Ah.15g091270 Amaranthus hybridus HOM05D001588 ORTHO05D002975 7.3e-07 57.0 69 44.9
MELO3C027288.2 Cucumis melo HOM05D001588 ORTHO05D002975 7.3e-07 57.0 62 54.8
ECA248G3418 Erigeron canadensis HOM05D001588 ORTHO05D002975 7.3e-07 57.0 70 47.1
Thhalv10020316m.g Eutrema salsugineum HOM05D001588 ORTHO05D002975 7.3e-07 57.0 61 50.8
MSTRG.26663 Avicennia marina HOM05D001588 ORTHO05D002975 9.6e-07 56.6 70 44.3
BcaB04g21231 Brassica carinata HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
A05p39000 Brassica napus HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
C05p58030 Brassica napus HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
BolC5t34459H Brassica oleracea HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
BraA05t22691Z Brassica rapa HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
Manes.08G017400 Manihot esculenta HOM05D001588 ORTHO05D002975 9.6e-07 56.6 61 50.8
AL3G21380 Arabidopsis lyrata HOM05D001588 ORTHO05D002975 1.2e-06 56.2 61 49.2
Duzib106G0304 Durio zibethinus HOM05D001588 ORTHO05D002975 1.2e-06 56.2 63 49.2
MSTRG.19212 Avicennia marina HOM05D001588 ORTHO05D002975 1.6e-06 55.8 62 46.8
AUR62037925 Chenopodium quinoa HOM05D001588 ORTHO05D002975 1.6e-06 55.8 70 44.3
AUR62040181 Chenopodium quinoa HOM05D001588 ORTHO05D002975 1.6e-06 55.8 70 44.3
THA.LOC104816384 Tarenaya hassleriana HOM05D001588 ORTHO05D002975 1.6e-06 55.8 61 49.2
Aa31LG3G2580 Aethionema arabicum HOM05D001588 ORTHO05D002975 2.1e-06 55.5 61 47.5
ATR0697G150 Amborella trichopoda HOM05D001588 ORTHO05D002975 2.1e-06 55.5 62 46.8
C03p43380 Brassica napus HOM05D001588 ORTHO05D002975 2.1e-06 55.5 60 50.0
SGA_v2.0_scaffold75G24813 Striga asiatica HOM05D001588 ORTHO05D002975 2.1e-06 55.5 70 42.9
TAR633G2163 Trochodendron aralioides HOM05D001588 ORTHO05D002975 2.1e-06 55.5 70 45.7
Carub.0003s0915 Capsella rubella HOM05D001588 ORTHO05D002975 2.8e-06 55.1 61 47.5
Cfa016497 Carpinus fangiana HOM05D001588 ORTHO05D002975 2.8e-06 55.1 61 49.2
CDE02G3443 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 2.8e-06 55.1 62 46.8
CDE02G4744 Ceratophyllum demersum HOM05D001588 ORTHO05D002975 2.8e-06 55.1 62 46.8
Dinv37367 Davidia involucrata HOM05D001588 ORTHO05D002975 2.8e-06 55.1 70 47.1
Gohir.D09G139200 Gossypium hirsutum HOM05D001588 ORTHO05D002975 2.8e-06 55.1 61 47.5
Gorai.006G159700 Gossypium raimondii HOM05D001588 ORTHO05D002975 2.8e-06 55.1 61 47.5
HanXRQChr02g0052141 Helianthus annuus HOM05D001588 ORTHO05D002975 2.8e-06 55.1 62 48.4
PSO339G2383 Papaver somniferum HOM05D001588 ORTHO05D002975 2.8e-06 55.1 66 45.5
Thecc.05G076800 Theobroma cacao HOM05D001588 ORTHO05D002975 2.8e-06 55.1 63 47.6
GSVIVG01033731001 Vitis vinifera HOM05D001588 ORTHO05D002975 2.8e-06 55.1 72 44.4
AT3G10050 Arabidopsis thaliana HOM05D001588 ORTHO05D002975 3.6e-06 54.7 61 47.5
BcaC09g48118 Brassica carinata HOM05D001588 ORTHO05D002975 3.6e-06 54.7 62 48.4
Gohir.A09G143000 Gossypium hirsutum HOM05D001588 ORTHO05D002975 3.6e-06 54.7 61 47.5
HanXRQChr13g0400241 Helianthus annuus HOM05D001588 ORTHO05D002975 3.6e-06 54.7 62 46.8
Lsat_1_v5_gn_6_29060 Lactuca sativa HOM05D001588 ORTHO05D002975 3.6e-06 54.7 62 48.4
ECA233G3154 Erigeron canadensis HOM05D001588 ORTHO05D002975 4.7e-06 54.3 62 46.8
Gohir.D04G106300 Gossypium hirsutum HOM05D001588 ORTHO05D002975 4.7e-06 54.3 74 41.9
Hund29355 Selenicereus undatus HOM05D001588 ORTHO05D002975 4.7e-06 54.3 69 42.0
Hund29356 Selenicereus undatus HOM05D001588 ORTHO05D002975 4.7e-06 54.3 69 42.0
Lj3A1008G68 Lonicera japonica HOM05D001588 ORTHO05D002975 6.2e-06 53.9 72 44.4
CARHR084550 Cardamine hirsuta HOM05D001588 ORTHO05D002975 8.1e-06 53.5 61 49.2
Ciclev10011319m.g Citrus clementina HOM05D001588 ORTHO05D002975 8.1e-06 53.5 72 41.7
Sp3g08360 Schrenkiella parvula HOM05D001588 ORTHO05D002975 8.1e-06 53.5 61 49.2
unitig_899.g15214 Utricularia gibba HOM05D001588 ORTHO05D002975 8.1e-06 53.5 64 43.8


User provided reference genes

Program Settings