Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 6.2e-143 510.8 256 100.0
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 1.7e-124 449.5 261 88.1
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 3.3e-120 435.3 261 86.6
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 8.5e-100 367.5 262 76.0
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 1.6e-93 346.7 269 69.5
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 2.0e-93 346.3 186 88.7
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 1.3e-92 343.6 250 72.4
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 2.9e-92 342.4 192 87.0
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 3.8e-92 342.0 270 69.3
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 1.9e-91 339.7 259 69.5
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 1.9e-91 339.7 266 70.3
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 3.3e-91 339.0 186 86.6
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 5.5e-91 338.2 258 68.6
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 5.5e-91 338.2 263 70.3
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 9.5e-91 337.4 267 70.4
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 9.5e-91 337.4 267 70.4
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 9.5e-91 337.4 269 68.0
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 9.5e-91 337.4 236 75.4
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 1.2e-90 337.0 179 88.8
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 1.6e-90 336.7 180 88.3
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 2.1e-90 336.3 249 69.9
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 2.1e-90 336.3 241 71.0
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 2.8e-90 335.9 247 71.7
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 4.0e-89 332.0 181 87.8
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 8.9e-89 330.9 262 68.3
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 8.9e-89 330.9 194 85.6
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 1.5e-88 330.1 261 69.0
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 4.4e-88 328.6 268 66.8
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 7.5e-88 327.8 261 70.1
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 1.3e-87 327.0 185 85.9
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 2.8e-87 325.9 178 87.6
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 2.8e-87 325.9 263 67.7
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 2.8e-87 325.9 243 69.5
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 3.7e-87 325.5 239 70.3
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.4e-86 323.6 185 83.2
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 1.4e-86 323.6 251 69.7
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 3.1e-86 322.4 261 66.3
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 3.1e-86 322.4 181 84.5
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 4.1e-86 322.0 239 69.9
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 7.0e-86 321.2 262 67.2
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 9.2e-86 320.9 186 84.9
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 2.0e-85 319.7 254 68.5
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 2.7e-85 319.3 265 65.3
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 4.5e-85 318.5 192 79.2
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 1.0e-84 317.4 261 65.1
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 1.0e-84 317.4 181 84.5
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 2.3e-84 316.2 264 66.3
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.3e-84 316.2 258 64.3
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 1.5e-83 313.5 256 64.8
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 3.3e-83 312.4 200 76.5
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 5.6e-83 311.6 213 72.8
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 9.5e-83 310.8 211 74.9
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 2.1e-82 309.7 184 82.6
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 2.1e-82 309.7 244 69.7
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 2.8e-82 309.3 246 65.9
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 2.8e-82 309.3 225 72.0
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 3.6e-82 308.9 182 81.3
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 4.7e-82 308.5 234 67.9
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 6.1e-82 308.1 264 65.2
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 8.0e-82 307.8 242 65.7
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 8.0e-82 307.8 244 68.4
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 1.0e-81 307.4 245 66.5
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 2.3e-81 306.2 256 64.1
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 2.3e-81 306.2 184 81.5
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 3.0e-81 305.8 221 70.6
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 6.8e-81 304.7 269 64.3
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 7.5e-80 301.2 251 62.9
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 7.5e-80 301.2 189 78.8
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 7.5e-80 301.2 259 61.8
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 2.9e-79 299.3 227 67.0
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 3.7e-79 298.9 176 81.2
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 1.6e-77 293.5 185 76.8
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 2.0e-77 293.1 220 69.5
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 9.5e-75 284.3 232 65.1
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 3.6e-74 282.3 151 87.4
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 6.2e-74 281.6 188 70.2
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 1.1e-73 280.8 281 58.7
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 3.1e-73 279.3 257 58.8
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 2.0e-72 276.6 245 60.4
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 2.0e-72 276.6 260 58.8
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 1.7e-71 273.5 188 72.9
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 8.3e-71 271.2 179 74.9
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 1.3e-68 263.8 222 66.2
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 1.5e-67 260.4 180 68.9
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 2.0e-64 250.0 248 56.0
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 3.4e-64 249.2 188 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 8.3e-63 244.6 187 64.7
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 3.2e-62 242.7 210 63.8
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 1.6e-58 230.3 132 84.1
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 2.8e-58 229.6 123 91.9
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 5.8e-56 221.9 132 81.8
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 5.4e-54 215.3 163 67.5
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 2.6e-48 196.4 171 62.0
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 1.7e-44 183.7 183 54.1
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 4.0e-41 172.6 183 53.6
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 3.4e-40 169.5 94 85.1
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 2.4e-33 146.7 129 60.5
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 7.1e-30 135.2 75 85.3
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 1.1e-25 121.3 65 86.2
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 4.3e-19 99.4 58 82.8
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 2.5e-11 73.6 69 53.6


User provided reference genes

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