Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G039460 Cucumis sativus L. HOM05D000860 ORTHO05D005731 4.0e-176 621.3 316 100.0
MELO3C014247.2 Cucumis melo HOM05D000860 ORTHO05D005731 1.6e-127 459.9 257 91.8
ClCG04G008950 Citrullus lanatus HOM05D000860 ORTHO05D005731 2.3e-115 419.5 255 83.9
Sed0008091 Sechium edule HOM05D000860 ORTHO05D005731 4.7e-92 342.0 259 67.6
ClCG10G020360 Citrullus lanatus HOM05D000860 ORTHO05D005731 9.7e-45 184.9 245 44.9
Sed0021746 Sechium edule HOM05D000860 ORTHO05D005731 1.3e-44 184.5 233 46.8
Cfa017540 Carpinus fangiana HOM05D000860 ORTHO05D005731 3.1e-43 179.9 263 44.5
Prupe.6G237600 Prunus persica HOM05D000860 ORTHO05D005731 3.4e-42 176.4 244 44.7
MELO3C009334.2 Cucumis melo HOM05D000860 ORTHO05D005731 1.0e-41 174.9 245 42.4
CiPaw.10G134300 Carya illinoinensis HOM05D000860 ORTHO05D005731 2.2e-41 173.7 245 43.3
Haze_20609 Corylus avellana HOM05D000860 ORTHO05D005731 2.9e-41 173.3 263 43.3
MD04G1099200 Malus domestica HOM05D000860 ORTHO05D005731 1.1e-40 171.4 245 45.3
CsaV3_3G035740 Cucumis sativus L. HOM05D000860 ORTHO05D005731 1.4e-40 171.0 245 41.6
QL07p044635 Quercus lobata HOM05D000860 ORTHO05D005731 5.5e-40 169.1 264 41.3
MD12G1119800 Malus domestica HOM05D000860 ORTHO05D005731 1.6e-39 167.5 250 44.4
RcHm_v2.0_Chr3g0469451 Rosa chinensis HOM05D000860 ORTHO05D005731 3.0e-38 163.3 244 41.8
FAN02G4050 Fragaria x ananassa HOM05D000860 ORTHO05D005731 3.9e-38 162.9 242 41.3
FAN05G3398 Fragaria x ananassa HOM05D000860 ORTHO05D005731 6.7e-38 162.2 242 40.9
FAN09G1893 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.1e-37 161.4 242 40.9
FAN14G4874 Fragaria x ananassa HOM05D000860 ORTHO05D005731 1.1e-37 161.4 242 40.9
FvH4_6g15740 Fragaria vesca HOM05D000860 ORTHO05D005731 2.6e-37 160.2 242 40.5
FAN14G5122 Fragaria x ananassa HOM05D000860 ORTHO05D005731 3.3e-37 159.8 242 40.5
Lalb_Chr01g0018861 Lupinus albus HOM05D000860 ORTHO05D005731 1.4e-35 154.5 265 38.1
Duzib093G2042 Durio zibethinus HOM05D000860 ORTHO05D005731 2.6e-34 150.2 256 40.6
Glyma.10G051900 Glycine max HOM05D000860 ORTHO05D005731 2.6e-34 150.2 246 39.8
Duzib128G0216 Durio zibethinus HOM05D000860 ORTHO05D005731 1.0e-33 148.3 247 40.9
CANSAT80G1090 Cannabis sativa HOM05D000860 ORTHO05D005731 1.3e-33 147.9 247 37.2
COL.COLO4_27038 Corchorus olitorius HOM05D000860 ORTHO05D005731 1.3e-33 147.9 247 40.5
CiPaw.09G177100 Carya illinoinensis HOM05D000860 ORTHO05D005731 8.5e-33 145.2 216 43.5
Ciclev10011672m.g Citrus clementina HOM05D000860 ORTHO05D005731 4.2e-32 142.9 246 39.8
Thecc.05G057900 Theobroma cacao HOM05D000860 ORTHO05D005731 1.2e-31 141.4 247 39.7
Eucgr.A01156 Eucalyptus grandis HOM05D000860 ORTHO05D005731 1.8e-30 137.5 232 40.1
Lalb_Chr06g0171491 Lupinus albus HOM05D000860 ORTHO05D005731 3.0e-30 136.7 249 39.4
Glyma.13G139300 Glycine max HOM05D000860 ORTHO05D005731 4.0e-30 136.3 234 40.6
Manes.08G006300 Manihot esculenta HOM05D000860 ORTHO05D005731 5.2e-30 136.0 263 36.9
Lj5g0023643 Lotus japonicus HOM05D000860 ORTHO05D005731 8.8e-30 135.2 237 38.8
VMungo0720G0157 Vigna mungo HOM05D000860 ORTHO05D005731 1.5e-29 134.4 231 39.4
TWI74G0048 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 2.0e-29 134.0 250 36.8
TPR.G21211 Trifolium pratense HOM05D000860 ORTHO05D005731 9.7e-29 131.7 273 35.2
arahy.Tifrunner.gnm1.ann1.7R2GAN Arachis hypogaea HOM05D000860 ORTHO05D005731 6.3e-28 129.0 268 34.7
Phvul.007G221200 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 6.3e-28 129.0 242 36.4
Potri.006G128800 Populus trichocarpa HOM05D000860 ORTHO05D005731 1.1e-27 128.3 250 39.6
Atru.chr8.1875 Acer truncatum HOM05D000860 ORTHO05D005731 1.4e-27 127.9 258 37.6
arahy.Tifrunner.gnm1.ann1.AHVV25 Arachis hypogaea HOM05D000860 ORTHO05D005731 3.1e-27 126.7 268 34.0
TWI53G0334 Tripterygium wilfordii HOM05D000860 ORTHO05D005731 3.1e-27 126.7 249 35.7
Medtr7g101130 Medicago truncatula HOM05D000860 ORTHO05D005731 7.0e-27 125.6 247 39.3
Sabra06G0101400 Salix brachista HOM05D000860 ORTHO05D005731 9.1e-27 125.2 257 37.4
Lj1g0015108 Lotus japonicus HOM05D000860 ORTHO05D005731 1.6e-26 124.4 263 35.7
Medtr1g064690 Medicago truncatula HOM05D000860 ORTHO05D005731 1.6e-26 124.4 236 38.6
Psat6g067960 Pisum sativum HOM05D000860 ORTHO05D005731 2.6e-26 123.6 249 36.5
RcHm_v2.0_Chr7g0226531 Rosa chinensis HOM05D000860 ORTHO05D005731 2.6e-26 123.6 187 42.2
Ca_08841_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 3.5e-26 123.2 265 34.7
TAR623G0466 Trochodendron aralioides HOM05D000860 ORTHO05D005731 7.7e-26 122.1 250 35.2
TPR.G21206 Trifolium pratense HOM05D000860 ORTHO05D005731 1.7e-25 120.9 252 36.5
Gohir.A01G215400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 5.0e-25 119.4 218 38.5
Gorai.013G027100 Gossypium raimondii HOM05D000860 ORTHO05D005731 5.0e-25 119.4 218 37.2
Hma1.2p1_1031F.1_g249970 Hydrangea macrophylla HOM05D000860 ORTHO05D005731 6.5e-25 119.0 232 36.2
Psat3g043560 Pisum sativum HOM05D000860 ORTHO05D005731 8.5e-25 118.6 248 35.5
Gohir.A13G025400 Gossypium hirsutum HOM05D000860 ORTHO05D005731 1.1e-24 118.2 218 36.7
Manes.09G068966 Manihot esculenta HOM05D000860 ORTHO05D005731 1.5e-24 117.9 170 41.2
Gorai.002G248500 Gossypium raimondii HOM05D000860 ORTHO05D005731 3.2e-24 116.7 218 37.6
Sabra16G0094600 Salix brachista HOM05D000860 ORTHO05D005731 5.5e-24 115.9 250 36.4
Gohir.D13G024000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 7.2e-24 115.5 218 36.7
CSS0027524 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 3.6e-23 113.2 246 35.8
CSS0043489 Camellia sinensis var. sinensis HOM05D000860 ORTHO05D005731 3.6e-23 113.2 246 35.8
Potri.016G088900 Populus trichocarpa HOM05D000860 ORTHO05D005731 8.0e-23 112.1 239 33.9
TPR.G18266 Trifolium pratense HOM05D000860 ORTHO05D005731 1.0e-22 111.7 250 36.4
Nn2g10774 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.8e-22 110.9 257 32.7
AUR62042284 Chenopodium quinoa HOM05D000860 ORTHO05D005731 7.5e-21 105.5 253 31.2
Migut.O00631 Erythranthe guttata HOM05D000860 ORTHO05D005731 7.5e-21 105.5 278 33.1
vmacro14442 Vaccinium macrocarpon HOM05D000860 ORTHO05D005731 7.5e-21 105.5 246 33.3
SGA_v2.0_scaffold97G29220 Striga asiatica HOM05D000860 ORTHO05D005731 1.7e-20 104.4 266 31.6
Rhsim01G0217500 Rhododendron simsii HOM05D000860 ORTHO05D005731 2.2e-20 104.0 253 34.0
Peaxi162Scf00270g00092 Petunia axillaris HOM05D000860 ORTHO05D005731 1.8e-19 100.9 271 34.3
AUR62040362 Chenopodium quinoa HOM05D000860 ORTHO05D005731 2.4e-19 100.5 253 30.8
Lsat_1_v5_gn_6_46140 Lactuca sativa HOM05D000860 ORTHO05D005731 7.0e-19 99.0 247 32.4
EL10Ac7g16545 Beta vulgaris HOM05D000860 ORTHO05D005731 9.1e-19 98.6 253 31.6
Oeu001264.1 Olea europaea HOM05D000860 ORTHO05D005731 9.1e-19 98.6 252 32.9
Gohir.D01G204000 Gossypium hirsutum HOM05D000860 ORTHO05D005731 1.2e-18 98.2 137 46.7
Aqoxy1G01248 Aquilegia oxysepala HOM05D000860 ORTHO05D005731 2.7e-18 97.1 235 31.1
Aa31LG10G8580 Aethionema arabicum HOM05D000860 ORTHO05D005731 4.5e-18 96.3 252 32.5
Sc20g0005200 Simmondsia chinensis HOM05D000860 ORTHO05D005731 5.9e-18 95.9 251 31.9
PSO339G5579 Papaver somniferum HOM05D000860 ORTHO05D005731 7.7e-18 95.5 254 33.5
Migut.D02216 Erythranthe guttata HOM05D000860 ORTHO05D005731 1.0e-17 95.1 166 38.6
PSO063G2151 Papaver somniferum HOM05D000860 ORTHO05D005731 1.3e-17 94.7 254 34.3
QL09p001288 Quercus lobata HOM05D000860 ORTHO05D005731 1.3e-17 94.7 138 44.2
Ca_11464_v3 Cicer arietinum L. HOM05D000860 ORTHO05D005731 2.2e-17 94.0 202 35.6
Solyc11g069330.1 Solanum lycopersicum HOM05D000860 ORTHO05D005731 2.2e-17 94.0 273 33.3
Sopen11g028050 Solanum pennellii HOM05D000860 ORTHO05D005731 2.2e-17 94.0 273 33.3
PGSC0003DMG400008059 Solanum tuberosum HOM05D000860 ORTHO05D005731 2.9e-17 93.6 273 33.0
RcHm_v2.0_Chr1g0337551 Rosa chinensis HOM05D000860 ORTHO05D005731 5.0e-17 92.8 128 46.1
SalBow3G0016 Salvia bowleyana HOM05D000860 ORTHO05D005731 6.5e-17 92.4 245 34.3
DCAR_022736 Daucus carota HOM05D000860 ORTHO05D005731 8.5e-17 92.0 159 39.0
Thhalv10011158m.g Eutrema salsugineum HOM05D000860 ORTHO05D005731 8.5e-17 92.0 253 30.4
Glyma.03G180300 Glycine max HOM05D000860 ORTHO05D005731 8.5e-17 92.0 245 33.9
VMungo1383G0750 Vigna mungo HOM05D000860 ORTHO05D005731 1.5e-16 91.3 262 32.4
Ah.15g092300 Amaranthus hybridus HOM05D000860 ORTHO05D005731 1.9e-16 90.9 255 29.4
Nitab4.5_0000650g0160 Nicotiana tabacum HOM05D000860 ORTHO05D005731 2.5e-16 90.5 271 31.7
Nitab4.5_0003701g0030 Nicotiana tabacum HOM05D000860 ORTHO05D005731 2.5e-16 90.5 271 31.7
THA.LOC104806503 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 2.5e-16 90.5 248 28.6
DCAR_018816 Daucus carota HOM05D000860 ORTHO05D005731 7.2e-16 89.0 250 32.4
MBI10_g20798_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D005731 4.7e-15 86.3 241 30.7
CAN.G631.19 Capsicum annuum HOM05D000860 ORTHO05D005731 6.1e-15 85.9 276 32.6
ATR0115G014 Amborella trichopoda HOM05D000860 ORTHO05D005731 8.0e-15 85.5 242 31.8
C04p39180 Brassica napus HOM05D000860 ORTHO05D005731 8.0e-15 85.5 257 28.4
CARHR163310 Cardamine hirsuta HOM05D000860 ORTHO05D005731 8.0e-15 85.5 250 29.2
AT3G53400 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 1.0e-14 85.1 258 27.5
Sp5g08940 Schrenkiella parvula HOM05D000860 ORTHO05D005731 1.0e-14 85.1 254 29.9
BcaC02g09168 Brassica carinata HOM05D000860 ORTHO05D005731 3.0e-14 83.6 257 28.0
A04p06160 Brassica napus HOM05D000860 ORTHO05D005731 3.0e-14 83.6 257 28.8
Glyma.19G181000 Glycine max HOM05D000860 ORTHO05D005731 4.0e-14 83.2 263 31.2
THA.LOC104816335 Tarenaya hassleriana HOM05D000860 ORTHO05D005731 4.0e-14 83.2 251 28.7
BolC4t25490H Brassica oleracea HOM05D000860 ORTHO05D005731 5.2e-14 82.8 200 30.5
BraA04t16319Z Brassica rapa HOM05D000860 ORTHO05D005731 5.2e-14 82.8 257 28.8
Carub.0005s1996 Capsella rubella HOM05D000860 ORTHO05D005731 5.2e-14 82.8 259 28.6
Cc01_g11220 Coffea canephora HOM05D000860 ORTHO05D005731 8.8e-14 82.0 234 31.2
HanXRQChr13g0403481 Helianthus annuus HOM05D000860 ORTHO05D005731 8.8e-14 82.0 161 34.2
Phvul.001G176600 Phaseolus vulgaris HOM05D000860 ORTHO05D005731 1.3e-12 78.2 247 31.2
Nn1g03119 Nelumbo nucifera HOM05D000860 ORTHO05D005731 1.7e-12 77.8 91 45.1
AL5G34320 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 6.3e-12 75.9 258 27.1
ECA233G3204 Erigeron canadensis HOM05D000860 ORTHO05D005731 2.4e-11 73.9 150 32.7
BcaB02g08527 Brassica carinata HOM05D000860 ORTHO05D005731 3.1e-11 73.6 259 30.1
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.2e-10 71.6 115 41.7
SalBow3G3227 Salvia bowleyana HOM05D000860 ORTHO05D005731 1.6e-10 71.2 169 34.3
Aa31LG1G21890 Aethionema arabicum HOM05D000860 ORTHO05D005731 2.7e-10 70.5 233 25.8
Psat6g084760 Pisum sativum HOM05D000860 ORTHO05D005731 2.7e-10 70.5 116 41.4
unitig_22.g6662 Utricularia gibba HOM05D000860 ORTHO05D005731 2.7e-10 70.5 149 36.9
Actinidia20451 Actinidia chinensis HOM05D000860 ORTHO05D005731 3.8e-09 66.6 86 41.9
Lsat_1_v5_gn_1_65400 Lactuca sativa HOM05D000860 ORTHO05D005731 3.8e-09 66.6 175 28.6
ECA248G3821 Erigeron canadensis HOM05D000860 ORTHO05D005731 6.6e-09 65.9 133 36.8
AT5G03190 Arabidopsis thaliana HOM05D000860 ORTHO05D005731 8.6e-09 65.5 231 29.0
CARHR210160 Cardamine hirsuta HOM05D000860 ORTHO05D005731 1.2e-07 61.6 232 28.0
AL6G12470 Arabidopsis lyrata HOM05D000860 ORTHO05D005731 8.0e-07 58.9 231 28.1
Sp6g39530 Schrenkiella parvula HOM05D000860 ORTHO05D005731 1.4e-06 58.2 235 26.8
Aqoxy6G01123 Aquilegia oxysepala HOM05D000860 ORTHO05D026722 1.8e-06 57.8 132 31.8


User provided reference genes

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