Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.2e-148 528.5 284 100.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 9.4e-124 447.2 281 86.5
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 4.1e-87 325.5 289 69.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.3e-48 197.6 189 64.6
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 1.8e-37 160.6 326 37.7
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.8e-34 150.6 334 37.7
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-33 147.5 317 39.1
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 2.6e-33 146.7 310 38.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 3.4e-33 146.4 300 39.7
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 5.9e-33 145.6 298 39.6
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 2.2e-32 143.7 274 39.8
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.8e-32 142.9 290 37.2
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 8.5e-32 141.7 313 37.7
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.5e-31 140.2 290 36.9
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.5e-31 139.0 297 37.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.6e-30 137.5 303 39.3
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.1e-30 137.1 308 38.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.6e-30 136.0 226 42.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.6e-30 136.0 306 35.9
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 1.0e-29 134.8 286 40.2
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.8e-29 134.0 285 38.9
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.8e-29 134.0 310 38.1
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 3.0e-29 133.3 306 37.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.0e-29 133.3 327 38.5
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 8.7e-29 131.7 316 37.7
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.5e-28 131.0 310 37.4
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.9e-28 130.6 287 39.4
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.9e-28 130.6 209 45.5
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.3e-28 129.4 289 35.6
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 7.4e-28 128.6 320 36.2
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 9.7e-28 128.3 331 35.3
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.3e-27 127.9 316 35.8
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 2.8e-27 126.7 293 35.2
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 4.8e-27 125.9 338 34.6
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 4.8e-27 125.9 295 36.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 8.2e-27 125.2 322 34.5
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 8.2e-27 125.2 310 36.1
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.1e-26 124.8 277 38.6
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.4e-26 123.6 206 43.7
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.4e-26 123.6 206 43.7
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-26 123.2 206 42.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-26 123.2 206 42.7
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 4.1e-26 122.9 336 32.4
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.1e-26 122.9 321 36.1
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 5.3e-26 122.5 326 37.1
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.9e-26 122.1 282 36.9
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 6.9e-26 122.1 281 38.4
MELO3C015637.2 Cucumis melo HOM05D014642 ORTHO05D004928 9.0e-26 121.7 110 64.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 1.5e-25 120.9 286 37.1
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-25 120.9 206 42.7
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.0e-25 120.6 282 37.6
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.0e-25 120.6 326 36.5
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.0e-25 120.6 185 45.9
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.6e-25 120.2 298 35.9
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-25 120.2 206 43.2
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-25 120.2 206 43.2
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 4.5e-25 119.4 318 36.8
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.9e-25 119.0 296 33.8
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 5.9e-25 119.0 303 35.6
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 7.7e-25 118.6 288 36.8
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.3e-24 117.9 185 45.4
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.7e-24 117.5 304 36.2
MELO3C004718.2 Cucumis melo HOM05D014642 ORTHO05D004928 8.5e-24 115.2 92 72.8
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-23 114.4 322 36.0
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.9e-23 114.0 287 34.8
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-23 113.6 185 44.3
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 4.2e-23 112.8 332 34.3
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.2e-23 112.1 335 32.2
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 7.2e-23 112.1 327 35.8
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 7.2e-23 112.1 327 35.8
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 7.2e-23 112.1 190 43.2
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 2.1e-22 110.5 228 38.2
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.1e-22 110.5 327 35.5
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 2.1e-22 110.5 294 33.0
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 2.7e-22 110.2 336 34.8
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 4.6e-22 109.4 326 34.7
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 7.9e-22 108.6 306 36.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.8e-21 107.5 301 35.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 2.3e-21 107.1 273 37.4
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 8.8e-21 105.1 316 32.6
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.6e-20 103.6 228 39.0
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 4.3e-20 102.8 271 36.9
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 5.7e-20 102.4 338 31.4
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 7.4e-20 102.1 189 42.3
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 7.4e-20 102.1 275 33.1
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 9.7e-20 101.7 272 37.5
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 9.7e-20 101.7 296 31.8
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.7e-19 100.9 290 34.1
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.7e-19 100.9 100 56.0
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.2e-19 100.5 285 33.3
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.8e-19 100.1 305 32.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.8e-19 99.4 263 37.3
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 6.3e-19 99.0 85 63.5
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 6.3e-19 99.0 228 37.3
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.4e-18 97.8 288 33.3
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 1.4e-18 97.8 278 32.4
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.4e-18 97.1 324 32.1
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.1e-18 96.7 269 34.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 4.1e-18 96.3 204 39.7
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 5.3e-18 95.9 343 32.1
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.9e-18 95.5 269 37.2
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 1.5e-17 94.4 343 31.2
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 2.0e-17 94.0 282 32.3
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 2.0e-17 94.0 290 33.1
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 3.4e-17 93.2 283 32.9
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.5e-17 92.8 327 31.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 5.9e-17 92.4 200 40.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 5.9e-17 92.4 270 35.2
MELO3C031153.2 Cucumis melo HOM05D014642 ORTHO05D004928 7.7e-17 92.0 110 52.7
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.0e-16 91.7 284 32.4
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.0e-16 91.7 284 32.4
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.3e-16 91.3 309 32.4
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.7e-16 90.9 284 31.7
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.2e-16 90.5 281 33.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.2e-16 90.5 336 30.1
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.2e-16 90.5 226 34.5
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.2e-16 90.5 309 32.7
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 2.9e-16 90.1 305 33.1
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 5.0e-16 89.4 95 56.8
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.1e-15 88.2 329 31.3
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.4e-15 87.8 279 30.8
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.2e-15 86.3 348 28.7
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 5.5e-15 85.9 288 30.2
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 7.2e-15 85.5 199 38.2
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.2e-15 85.5 285 31.9
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 9.4e-15 85.1 285 30.5
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 9.4e-15 85.1 73 61.6
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.6e-14 84.3 233 34.3
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.6e-14 84.3 127 43.3
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-14 84.3 317 31.9
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 4.7e-14 82.8 259 33.6
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.0e-13 81.6 234 33.8
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 3.0e-13 80.1 301 33.2
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 3.9e-13 79.7 303 31.4
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 3.9e-13 79.7 303 31.4
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 3.9e-13 79.7 276 30.8
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.2e-13 79.3 306 29.4
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.2e-13 79.3 297 32.0
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 5.2e-13 79.3 281 29.9
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 6.7e-13 79.0 301 31.9
MELO3C032964.2 Cucumis melo HOM05D014642 ORTHO05D004928 1.1e-12 78.2 53 79.2
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 3.3e-12 76.6 236 35.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.4e-12 76.3 300 30.0
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.4e-12 75.5 293 28.7
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.8e-11 72.8 172 37.2
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 4.8e-11 72.8 281 29.9
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 5.9e-09 65.9 296 29.1
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.3e-08 64.7 86 51.2
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.0e-08 62.8 265 29.1
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 9.4e-07 58.5 181 31.5
MELO3C033668.2 Cucumis melo HOM05D014642 ORTHO05D004928 2.7e-06 57.0 61 57.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.7e-06 56.2 90 44.4
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 8.0e-06 55.5 94 39.4


User provided reference genes

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