Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.1e-165 586.6 305 100.0
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 5.1e-152 541.2 290 94.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.1e-141 506.9 323 81.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 5.0e-139 498.0 291 85.9
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.7e-121 438.3 263 81.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 5.7e-119 431.4 263 79.5
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 9.8e-119 430.6 263 79.8
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.7e-118 429.9 303 72.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.8e-118 429.1 290 72.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.9e-118 428.3 262 80.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 8.3e-118 427.6 264 77.7
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 5.4e-117 424.9 262 79.4
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 7.0e-117 424.5 304 70.7
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 9.2e-117 424.1 302 71.2
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.6e-116 423.3 264 78.0
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.6e-116 423.3 263 77.9
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.6e-116 423.3 307 70.0
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.0e-116 422.9 307 70.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 2.7e-116 422.5 264 76.5
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.5e-116 421.8 307 70.4
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.9e-115 419.1 263 77.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 3.8e-115 418.7 264 75.8
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 6.6e-115 417.9 262 77.9
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 8.6e-115 417.5 262 77.5
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.3e-114 415.6 279 73.8
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 9.5e-114 414.1 264 75.8
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 9.5e-114 414.1 263 77.9
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.1e-113 412.9 264 76.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 3.6e-113 412.1 264 75.8
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 6.1e-113 411.4 298 68.8
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.4e-112 410.2 263 77.2
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.8e-112 409.8 263 77.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.8e-112 409.8 266 75.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.0e-112 409.1 263 76.4
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.0e-112 408.7 265 74.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.2e-112 408.3 264 74.6
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.8e-112 407.9 264 74.6
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 6.8e-112 407.9 263 75.7
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 6.8e-112 407.9 264 74.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 8.9e-112 407.5 263 75.3
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.2e-111 407.1 264 74.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-111 407.1 264 73.5
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.5e-111 406.8 302 67.5
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.0e-111 406.4 264 73.9
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 2.0e-111 406.4 291 69.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.6e-111 406.0 263 75.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.6e-111 406.0 263 75.3
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.4e-111 405.6 304 69.1
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 4.4e-111 405.2 265 75.5
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.7e-110 403.3 296 67.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.7e-110 403.3 265 73.6
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.2e-110 402.9 278 70.9
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.2e-110 402.9 276 73.6
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 3.7e-110 402.1 264 75.0
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.9e-110 401.7 264 75.4
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 4.9e-110 401.7 291 70.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 4.9e-110 401.7 264 73.5
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-109 400.6 263 73.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.4e-109 400.2 282 68.8
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 4.1e-109 398.7 262 75.6
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 7.0e-109 397.9 287 70.0
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.2e-108 397.1 264 72.7
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.6e-108 396.7 262 73.7
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.0e-108 396.4 264 71.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.0e-108 396.4 264 71.6
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.0e-108 396.4 264 71.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.5e-108 395.6 264 72.3
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.0e-107 394.0 273 72.2
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.3e-107 392.9 336 60.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 3.0e-107 392.5 292 69.5
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 3.0e-107 392.5 261 73.2
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.9e-107 392.1 302 65.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.0e-107 391.7 261 74.3
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.1e-106 390.6 263 71.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.5e-106 389.4 262 71.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 3.3e-106 389.0 273 71.4
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.3e-106 388.7 263 71.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 5.6e-106 388.3 263 71.9
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.2e-105 387.1 263 71.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.2e-105 387.1 263 70.3
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.8e-105 386.0 262 71.4
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.7e-105 385.2 311 62.7
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 8.0e-105 384.4 320 65.3
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.0e-104 384.0 278 66.5
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.0e-104 384.0 298 66.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.4e-104 383.6 263 71.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.4e-104 383.6 253 73.1
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.9e-104 380.9 261 71.6
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 6.4e-102 374.8 263 68.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.1e-101 374.0 263 69.6
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.4e-101 373.6 263 69.6
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.4e-101 373.6 264 70.1
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 3.2e-101 372.5 263 69.2
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 3.2e-101 372.5 263 69.2
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.6e-100 368.6 271 65.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-95 352.4 265 64.9
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.4e-95 352.1 265 67.5
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.3e-91 339.7 266 60.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.5e-90 337.0 263 67.3
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-89 334.0 221 73.3
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.2e-89 334.0 412 48.5
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.6e-89 332.4 278 57.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.4e-88 330.5 253 64.8
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 7.6e-87 324.7 264 59.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.7e-83 313.5 228 66.2
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.5e-82 309.7 204 74.5
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 4.3e-82 308.9 251 61.0
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 5.8e-79 298.5 258 54.3
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.4e-77 293.9 224 65.2
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.9e-77 293.5 192 74.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 6.6e-75 285.0 263 54.0
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.5e-74 283.9 306 52.9
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 9.9e-71 271.2 178 74.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.1e-58 231.1 253 47.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.9e-58 230.3 282 44.0
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.8e-56 223.8 309 41.7
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.2e-53 212.6 222 54.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 8.7e-51 204.9 270 43.3
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-45 186.8 140 67.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 2.5e-45 186.8 141 64.5
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-34 150.6 128 58.6
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.6e-34 150.2 140 58.6
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 4.5e-23 112.8 90 63.3
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.8e-22 109.8 284 31.3
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.5e-21 105.9 105 57.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 9.4e-21 105.1 64 71.9
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.6e-20 104.4 70 72.9
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 5.3e-16 89.4 206 29.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.2e-14 84.0 69 60.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.5e-14 82.0 72 55.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-11 74.3 41 80.5
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.8e-08 64.3 76 42.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.8e-08 64.3 62 51.6
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.4e-08 63.9 44 65.9


User provided reference genes

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