Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 1.5e-61 239.2 108 100.0
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 3.2e-32 141.7 76 84.2
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 4.6e-31 137.9 74 82.4
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 4.6e-31 137.9 74 82.4
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 7.9e-31 137.1 73 80.8
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 7.9e-31 137.1 73 80.8
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 7.9e-31 137.1 73 80.8
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 1.0e-30 136.7 73 83.6
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 1.0e-30 136.7 73 80.8
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 2.3e-30 135.6 75 81.3
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 6.7e-30 134.0 73 82.2
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 1.5e-29 132.9 73 78.1
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 1.5e-29 132.9 73 79.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.5e-29 132.9 74 77.0
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 1.9e-29 132.5 73 82.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.9e-29 132.5 73 82.2
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 2.5e-29 132.1 73 82.2
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 3.3e-29 131.7 73 78.1
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.3e-29 131.3 74 75.7
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 4.3e-29 131.3 73 78.1
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 5.7e-29 131.0 73 76.7
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 9.7e-29 130.2 74 77.0
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 1.7e-28 129.4 74 77.0
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 2.8e-28 128.6 72 73.6
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 3.7e-28 128.3 73 75.3
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 4.8e-28 127.9 74 75.7
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 4.8e-28 127.9 74 74.3
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 6.3e-28 127.5 74 74.3
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 8.2e-28 127.1 73 76.7
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 8.2e-28 127.1 73 75.3
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 8.2e-28 127.1 73 78.1
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.8e-27 125.9 73 72.6
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 3.1e-27 125.2 65 78.5
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 3.1e-27 125.2 74 68.9
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 4.1e-27 124.8 73 75.3
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 9.1e-27 123.6 76 68.4
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 9.1e-27 123.6 76 69.7
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 9.1e-27 123.6 76 69.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.5e-26 122.9 83 66.3
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 2.0e-26 122.5 72 72.2
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 2.6e-26 122.1 73 75.3
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 5.9e-26 120.9 71 70.4
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 5.9e-26 120.9 66 77.3
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 7.7e-26 120.6 74 68.9
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 1.0e-25 120.2 78 67.9
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 1.0e-25 120.2 88 62.5
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.3e-25 119.8 83 66.3
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 1.7e-25 119.4 76 71.1
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 2.2e-25 119.0 81 65.4
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 3.8e-25 118.2 80 66.2
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 3.8e-25 118.2 75 66.7
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 6.5e-25 117.5 75 70.7
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 6.5e-25 117.5 83 66.3
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 6.5e-25 117.5 83 66.3
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 5.5e-24 114.4 78 67.9
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 4.7e-23 111.3 73 63.0
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 4.7e-23 111.3 66 65.2
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 7.9e-23 110.5 75 62.7
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 1.8e-22 109.4 85 55.3
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.3e-22 109.0 76 65.8
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 2.3e-22 109.0 73 67.1
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 3.0e-22 108.6 76 64.5
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 3.0e-22 108.6 76 64.5
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 3.0e-22 108.6 76 64.5
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 5.1e-22 107.8 76 65.8
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 5.1e-22 107.8 76 65.8
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 8.8e-22 107.1 75 61.3
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 1.1e-21 106.7 76 64.5
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 2.0e-21 105.9 74 63.5
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 2.0e-21 105.9 74 63.5
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 2.0e-21 105.9 76 64.5
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 2.0e-21 105.9 74 63.5
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 2.6e-21 105.5 76 57.9
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 3.3e-21 105.1 73 60.3
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 4.4e-21 104.8 74 60.8
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 5.7e-21 104.4 76 64.5
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 5.7e-21 104.4 73 63.0
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 1.3e-20 103.2 76 63.2
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.3e-20 103.2 76 63.2
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 2.8e-20 102.1 80 55.0
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 6.3e-20 100.9 73 60.3
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 6.3e-20 100.9 71 67.6
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 8.5e-09 63.9 43 60.5
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.3e-06 55.8 35 62.9
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 5.2e-06 54.7 69 39.1


User provided reference genes

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