Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 2.8e-157 558.5 276 100.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 1.2e-139 500.0 277 90.3
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.8e-117 425.6 284 76.1
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 3.2e-100 369.0 275 66.9
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 3.0e-98 362.5 271 69.4
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 2.8e-64 249.6 284 48.9
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 3.7e-64 249.2 288 45.8
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.3e-58 230.7 278 45.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.8e-58 230.3 278 45.3
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.8e-58 230.3 278 45.7
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 7.4e-57 224.9 238 49.2
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.3e-56 224.2 290 43.4
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 4.8e-56 222.2 295 42.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.1e-55 219.5 278 44.2
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 4.0e-55 219.2 250 47.6
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 4.0e-55 219.2 239 45.6
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 4.5e-54 215.7 290 42.4
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.8e-54 215.3 273 42.9
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.7e-53 213.8 300 41.7
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 2.2e-53 213.4 255 43.5
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 4.9e-53 212.2 275 41.8
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 6.5e-53 211.8 279 46.2
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 8.4e-53 211.5 278 41.7
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.4e-52 210.7 251 45.0
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.2e-52 209.1 251 43.4
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 5.5e-52 208.8 231 44.6
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 5.5e-52 208.8 284 41.5
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 3.5e-51 206.1 247 43.3
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 6.0e-51 205.3 272 41.2
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 6.0e-51 205.3 243 48.6
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.8e-50 203.8 233 47.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.9e-49 200.3 282 39.7
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 4.8e-48 195.7 293 40.3
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 8.2e-48 194.9 249 43.0
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.1e-47 193.0 275 42.5
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 2.0e-46 190.3 245 42.9
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 2.0e-46 190.3 247 43.3
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 2.6e-46 189.9 253 41.9
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.0e-45 188.0 283 38.2
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 2.2e-45 186.8 247 45.3
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 5.0e-45 185.7 290 39.3
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 6.5e-45 185.3 256 43.0
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 4.2e-44 182.6 296 38.9
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 9.4e-44 181.4 255 40.0
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 1.6e-43 180.6 294 38.4
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 1.6e-43 180.6 280 38.9
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 3.6e-43 179.5 257 42.0
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 3.0e-42 176.4 281 37.0
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 4.3e-41 172.6 258 37.2
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 8.2e-40 168.3 272 38.6
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.8e-39 167.2 259 40.5
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 6.9e-39 165.2 238 41.2
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.6e-38 163.3 266 36.1
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.5e-38 162.5 199 46.2
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 7.7e-38 161.8 263 37.3
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.0e-37 161.4 292 33.6
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.0e-37 161.4 272 37.5
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 1.0e-37 161.4 242 38.8
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 1.0e-37 161.4 242 38.8
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 2.2e-37 160.2 243 38.3
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.2e-37 160.2 308 34.7
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.8e-37 159.5 279 34.8
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 3.8e-37 159.5 308 34.7
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 3.8e-37 159.5 287 35.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.0e-37 159.1 261 34.9
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 1.4e-36 157.5 207 43.0
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.9e-36 157.1 264 37.5
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 3.2e-36 156.4 258 36.4
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 3.2e-36 156.4 254 40.2
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 4.2e-36 156.0 263 37.3
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 4.2e-36 156.0 178 45.5
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 3.6e-35 152.9 262 38.2
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 4.7e-35 152.5 197 39.1
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 3.0e-34 149.8 196 41.8
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 8.8e-34 148.3 289 33.9
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.1e-33 147.9 245 36.3
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 5.7e-33 145.6 268 34.3
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.1e-28 131.3 260 31.9
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.4e-28 131.0 246 32.5
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 1.4e-28 131.0 169 43.2
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.5e-28 130.2 249 32.9
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 6.7e-26 122.1 252 32.5
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 6.7e-26 122.1 226 32.7
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.1e-25 121.3 279 31.9
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.0e-25 120.6 165 42.4
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.0e-22 110.5 125 44.0
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.9e-20 104.0 183 36.6
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 6.7e-18 95.5 174 33.9
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 1.2e-17 94.7 133 45.1
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 1.8e-15 87.4 116 40.5
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.2e-14 84.7 331 26.0
AUR62039065 Chenopodium quinoa HOM05D001524 ORTHO05D001392 5.9e-14 82.4 232 25.4
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 2.5e-12 77.0 202 28.7
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 4.2e-12 76.3 60 51.7
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 4.2e-12 76.3 203 28.6
CsaV3_7G008220 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.6e-11 74.3 207 29.0
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.0e-10 71.6 204 27.9
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.4e-10 71.2 221 24.9
RcHm_v2.0_Chr6g0254831 Rosa chinensis HOM05D001524 ORTHO05D001392 1.4e-10 71.2 239 25.9
Sabra09G0073000 Salix brachista HOM05D001524 ORTHO05D001392 1.4e-10 71.2 239 25.1
Cfa004594 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.8e-10 70.9 229 24.9
AUR62039066 Chenopodium quinoa HOM05D001524 ORTHO05D001392 3.0e-10 70.1 204 27.5
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.8e-10 68.9 228 26.8
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.8e-10 68.9 219 21.9
ClCG02G006450 Citrullus lanatus HOM05D001524 ORTHO05D001392 1.2e-09 68.2 219 23.3
SEGI_23215 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.2e-09 68.2 218 26.1
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 1.5e-09 67.8 234 23.9
SMO144G0101 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 1.5e-09 67.8 203 27.6
SMO144G0004 Selaginella moellendorffii HOM05D001524 ORTHO05D001392 4.4e-09 66.2 207 26.6
SEGI_17993 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 5.7e-09 65.9 223 22.9
CsaV3_7G008240 Cucumis sativus L. HOM05D001524 ORTHO05D001392 7.5e-09 65.5 209 26.3
MELO3C018483.2 Cucumis melo HOM05D001524 ORTHO05D001392 9.8e-09 65.1 196 27.0
Lj9P323T45 Lonicera japonica HOM05D001524 ORTHO05D001392 9.8e-09 65.1 219 24.7
Cfa004596 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.3e-08 64.7 207 25.1
Eucgr.G01335 Eucalyptus grandis HOM05D001524 ORTHO05D001392 1.3e-08 64.7 224 25.0
Prupe.8G136200 Prunus persica HOM05D001524 ORTHO05D001392 1.3e-08 64.7 236 26.3
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.7e-08 64.3 208 25.5
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 2.2e-08 63.9 214 25.7
Potri.001G299400 Populus trichocarpa HOM05D001524 ORTHO05D001392 2.2e-08 63.9 221 24.0
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 2.8e-08 63.5 236 23.7
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 2.8e-08 63.5 207 23.7
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 2.8e-08 63.5 223 24.2
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 2.8e-08 63.5 219 23.3
TAR628G1720 Trochodendron aralioides HOM05D001524 ORTHO05D001392 2.8e-08 63.5 221 24.9
Ah.01g018320 Amaranthus hybridus HOM05D001524 ORTHO05D001392 3.7e-08 63.2 205 26.3
FvH4_2g05010 Fragaria vesca HOM05D001524 ORTHO05D001392 3.7e-08 63.2 227 25.1
Lj9C324T0 Lonicera japonica HOM05D001524 ORTHO05D001392 3.7e-08 63.2 196 23.5
MD05G1090800 Malus domestica HOM05D001524 ORTHO05D001392 3.7e-08 63.2 204 25.5
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 3.7e-08 63.2 223 25.6
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 3.7e-08 63.2 231 26.4
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 4.8e-08 62.8 213 23.5
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 4.8e-08 62.8 229 24.5
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 4.8e-08 62.8 206 24.3
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 6.3e-08 62.4 223 25.6
Atru.chr5.2558 Acer truncatum HOM05D001524 ORTHO05D001392 1.1e-07 61.6 219 21.0
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.1e-07 61.6 202 25.2
Haze_10192 Corylus avellana HOM05D001524 ORTHO05D001392 1.1e-07 61.6 206 24.3
TPR.G3275 Trifolium pratense HOM05D001524 ORTHO05D001392 1.1e-07 61.6 199 24.6
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 1.4e-07 61.2 230 22.2
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 1.4e-07 61.2 232 24.6
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 1.4e-07 61.2 208 24.5
PGR042G2205 Punica granatum HOM05D001524 ORTHO05D001392 1.4e-07 61.2 223 26.9
Cfa004595 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.8e-07 60.8 206 24.3
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 1.8e-07 60.8 226 23.0
Potri.009G094600 Populus trichocarpa HOM05D001524 ORTHO05D001392 1.8e-07 60.8 233 24.0
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 2.4e-07 60.5 239 25.1
Medtr1g107215 Medicago truncatula HOM05D001524 ORTHO05D001392 2.4e-07 60.5 229 23.6
Prupe.8G136100 Prunus persica HOM05D001524 ORTHO05D001392 2.4e-07 60.5 228 26.3
RcHm_v2.0_Chr6g0254801 Rosa chinensis HOM05D001524 ORTHO05D001392 2.4e-07 60.5 224 25.4
Lj9C324T3 Lonicera japonica HOM05D001524 ORTHO05D001392 3.1e-07 60.1 198 24.2
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 3.1e-07 60.1 212 24.1
Prupe.8G136300 Prunus persica HOM05D001524 ORTHO05D001392 3.1e-07 60.1 168 25.0
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 3.1e-07 60.1 208 23.1
TPR.G3271 Trifolium pratense HOM05D001524 ORTHO05D001392 3.1e-07 60.1 210 24.3
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 4.1e-07 59.7 205 23.4
CiPaw.05G012400 Carya illinoinensis HOM05D001524 ORTHO05D001392 4.1e-07 59.7 227 24.2
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 7.0e-07 58.9 216 22.7
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 9.1e-07 58.5 178 27.5
Eucgr.H03199 Eucalyptus grandis HOM05D001524 ORTHO05D001392 9.1e-07 58.5 224 25.0
PGR042G1781 Punica granatum HOM05D001524 ORTHO05D001392 9.1e-07 58.5 172 24.4
SEGI_23136 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 9.1e-07 58.5 213 22.1
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 9.1e-07 58.5 206 23.8
CSS0032374 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 1.2e-06 58.2 200 22.0
CSS0047320 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 1.2e-06 58.2 200 22.0
Haze_10193 Corylus avellana HOM05D001524 ORTHO05D001392 1.2e-06 58.2 183 23.0
Prupe.8G136400 Prunus persica HOM05D001524 ORTHO05D001392 1.2e-06 58.2 226 23.9
SalBow6G1183 Salvia bowleyana HOM05D001524 ORTHO05D001392 1.2e-06 58.2 226 23.9
VMungo0720G2083 Vigna mungo HOM05D001524 ORTHO05D001392 1.2e-06 58.2 221 25.8
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.6e-06 57.8 208 22.6
Psat6g217560 Pisum sativum HOM05D001524 ORTHO05D001392 2.0e-06 57.4 227 24.2
Lalb_Chr21g0308301 Lupinus albus HOM05D001524 ORTHO05D001392 2.7e-06 57.0 191 24.1
Eucgr.G01330 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.5e-06 56.6 224 25.0
Nitab4.5_0011634g0010 Nicotiana tabacum HOM05D001524 ORTHO05D001392 3.5e-06 56.6 208 22.6
Lsat_1_v5_gn_9_112561 Lactuca sativa HOM05D001524 ORTHO05D001392 4.5e-06 56.2 207 23.2
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 5.9e-06 55.8 217 22.1
ClCG02G006460 Citrullus lanatus HOM05D001524 ORTHO05D001392 5.9e-06 55.8 197 24.9
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 7.7e-06 55.5 207 25.1


User provided reference genes

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