Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 1.1e-139 500.0 247 100.0
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 1.0e-129 466.8 247 93.1
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 1.8e-123 446.0 255 87.5
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 2.5e-112 409.1 255 81.6
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 2.3e-54 216.5 265 47.5
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 7.6e-53 211.5 266 47.7
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 1.7e-52 210.3 266 45.5
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 1.1e-51 207.6 267 47.6
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 1.6e-50 203.8 261 46.7
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 3.5e-50 202.6 266 46.6
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 2.3e-49 199.9 268 45.9
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 8.6e-49 198.0 311 40.8
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 1.2e-47 194.1 312 42.3
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 1.6e-47 193.7 270 43.7
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 3.6e-47 192.6 257 44.0
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 6.2e-47 191.8 276 44.2
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 1.4e-46 190.7 269 42.8
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 1.8e-46 190.3 267 43.4
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 6.8e-46 188.3 274 44.5
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 6.8e-46 188.3 255 46.3
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 1.5e-45 187.2 272 40.4
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 2.0e-45 186.8 260 44.2
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 2.6e-45 186.4 259 44.4
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 3.4e-45 186.0 250 42.8
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 4.4e-45 185.7 282 41.5
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 4.4e-45 185.7 282 41.5
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 5.8e-45 185.3 269 44.2
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 5.8e-45 185.3 269 44.2
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 3.8e-44 182.6 302 41.1
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 4.9e-44 182.2 272 43.4
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 8.4e-44 181.4 272 43.4
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 8.4e-44 181.4 263 42.2
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 1.9e-43 180.3 267 42.7
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 3.2e-43 179.5 216 48.1
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 4.2e-43 179.1 257 42.0
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 7.1e-43 178.3 267 41.2
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 1.6e-42 177.2 246 45.1
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 2.1e-42 176.8 256 42.2
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 3.5e-42 176.0 249 43.8
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 4.6e-42 175.6 278 42.1
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 7.8e-42 174.9 285 40.0
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 1.3e-41 174.1 274 42.0
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 1.3e-41 174.1 244 44.7
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 1.7e-41 173.7 277 41.9
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 1.7e-41 173.7 255 42.0
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 5.1e-41 172.2 274 41.2
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 5.1e-41 172.2 253 41.5
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 1.9e-40 170.2 277 39.4
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 4.3e-40 169.1 304 38.5
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 5.6e-40 168.7 261 40.2
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 2.1e-39 166.8 274 37.2
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 1.1e-38 164.5 271 37.3
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 1.4e-38 164.1 250 40.8
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 5.3e-38 162.2 253 39.9
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 5.3e-38 162.2 206 48.5
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 9.0e-38 161.4 271 38.7
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 2.6e-37 159.8 267 37.1
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 2.6e-37 159.8 269 40.1
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.3e-36 157.5 287 39.0
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 1.3e-36 157.5 285 37.9
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 2.2e-36 156.8 251 39.4
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 2.2e-36 156.8 261 41.0
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 2.2e-36 156.8 259 40.9
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 3.8e-36 156.0 244 41.4
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 1.1e-35 154.5 269 39.4
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 2.4e-35 153.3 261 36.8
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 1.2e-34 151.0 265 38.9
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 3.5e-34 149.4 269 34.9
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 3.9e-33 146.0 295 35.6
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 6.6e-33 145.2 287 36.2
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.9e-32 143.7 204 42.6
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 2.5e-32 143.3 283 33.6
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 1.3e-31 141.0 283 33.9
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 1.3e-31 141.0 281 33.5
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 2.1e-31 140.2 271 33.2
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 2.8e-31 139.8 299 32.8
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 2.8e-31 139.8 243 36.6
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.4e-30 137.5 298 31.9
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 4.0e-30 136.0 308 31.8
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 6.9e-30 135.2 216 40.3
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 1.5e-29 134.0 293 33.1
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 1.5e-29 134.0 252 38.9
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 5.8e-29 132.1 309 30.4
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 3.8e-28 129.4 287 33.8
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.1e-27 127.9 102 56.9
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 1.4e-27 127.5 232 36.2
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.9e-27 127.1 205 40.5
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 2.4e-27 126.7 158 46.2
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 4.2e-27 125.9 217 40.1
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 7.9e-26 121.7 237 36.7
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 4.3e-24 115.9 216 35.2
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 3.7e-23 112.8 257 31.9
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 2.4e-22 110.2 86 58.1
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 1.2e-21 107.8 268 32.8
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 3.4e-21 106.3 226 33.2
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 5.5e-19 99.0 264 29.9
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 2.5e-16 90.1 175 34.3
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 3.4e-13 79.7 118 45.8
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 2.1e-10 70.5 204 29.9
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 1.3e-09 67.8 167 31.7
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 3.0e-09 66.6 106 39.6
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 3.0e-09 66.6 131 35.9
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 1.3e-07 61.2 64 43.8
Gohir.D02G039500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 2.2e-07 60.5 126 27.8
Lj1g0022257 Lotus japonicus HOM05D000136 ORTHO05D000080 2.2e-07 60.5 100 32.0
PGR042G1027 Punica granatum HOM05D000136 ORTHO05D000080 2.2e-07 60.5 100 34.0
CiPaw.03G011300 Carya illinoinensis HOM05D000136 ORTHO05D000080 3.7e-07 59.7 103 31.1
Ah.10g036770 Amaranthus hybridus HOM05D000136 ORTHO05D000080 8.2e-07 58.5 118 30.5
Gohir.A02G032800 Gossypium hirsutum HOM05D000136 ORTHO05D000080 8.2e-07 58.5 99 29.3
Gorai.005G043700 Gossypium raimondii HOM05D000136 ORTHO05D000080 8.2e-07 58.5 99 29.3
ATR0051G012 Amborella trichopoda HOM05D000136 ORTHO05D000080 1.4e-06 57.8 127 29.9
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 1.8e-06 57.4 97 35.1
Cfa004429 Carpinus fangiana HOM05D000136 ORTHO05D000080 2.4e-06 57.0 100 34.0
CDE12G0467 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 2.4e-06 57.0 125 28.0
Eucgr.L02980 Eucalyptus grandis HOM05D001099 ORTHO05D000958 2.4e-06 57.0 112 30.4
TWI59G1419 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 2.4e-06 57.0 99 33.3
Eucgr.K00423 Eucalyptus grandis HOM05D001099 ORTHO05D000958 3.1e-06 56.6 112 30.4
Gohir.A07G020900 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.1e-06 56.6 151 26.5
MBI06_g17071_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 3.1e-06 56.6 99 29.3
Mapoly0038s0070 Marchantia polymorpha HOM05D000136 ORTHO05D000080 3.1e-06 56.6 98 33.7
Mapoly0045s0028 Marchantia polymorpha HOM05D000136 ORTHO05D000080 3.1e-06 56.6 99 35.4
AagrBONN_evm.TU.Sc2ySwM_228.5129 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.1e-06 56.2 99 31.3
Ca_04388_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 4.1e-06 56.2 102 32.4
HanXRQChr14g0458921 Helianthus annuus HOM05D000136 ORTHO05D000080 4.1e-06 56.2 128 29.7
Lalb_Chr12g0205411 Lupinus albus HOM05D000136 ORTHO05D000080 4.1e-06 56.2 117 32.5
SMO358G0201 Selaginella moellendorffii HOM05D001099 ORTHO05D000958 4.1e-06 56.2 118 28.0
SEGI_10361 Sequoiadendron giganteum HOM05D000136 ORTHO05D000958 4.1e-06 56.2 120 29.2
SEGI_25017 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 4.1e-06 56.2 102 33.3
Ah.05g171020 Amaranthus hybridus HOM05D000136 ORTHO05D000080 5.3e-06 55.8 100 30.0
CiPaw.04G159500 Carya illinoinensis HOM05D000136 ORTHO05D000080 5.3e-06 55.8 151 25.2
Manes.10G020100 Manihot esculenta HOM05D000136 ORTHO05D000080 5.3e-06 55.8 117 27.4
Nitab4.5_0000286g0090 Nicotiana tabacum HOM05D000136 ORTHO05D000080 5.3e-06 55.8 97 34.0
Atru.chr7.1909 Acer truncatum HOM05D000136 ORTHO05D000080 6.9e-06 55.5 98 33.7
Carub.0002s0540 Capsella rubella HOM05D000136 ORTHO05D000080 6.9e-06 55.5 118 30.5
CDE04G3561 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 6.9e-06 55.5 100 32.0
Duzib168G1644 Durio zibethinus HOM05D000136 ORTHO05D000080 6.9e-06 55.5 103 29.1
Eucgr.G00061 Eucalyptus grandis HOM05D000136 ORTHO05D000080 6.9e-06 55.5 103 30.1
Glyma.13G071400 Glycine max HOM05D000136 ORTHO05D000080 6.9e-06 55.5 100 31.0
Lalb_Chr16g0383931 Lupinus albus HOM05D000136 ORTHO05D000080 6.9e-06 55.5 117 31.6
Lalb_Chr16g0383961 Lupinus albus HOM05D000136 ORTHO05D000080 6.9e-06 55.5 117 31.6
Manes.01G167000 Manihot esculenta HOM05D000136 ORTHO05D000080 6.9e-06 55.5 103 31.1
Nitab4.5_0000286g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 6.9e-06 55.5 97 33.0
Pp3c21_6480 Physcomitrium patens HOM05D000136 ORTHO05D000080 6.9e-06 55.5 126 26.2
Pp3c21_6510 Physcomitrium patens HOM05D000136 ORTHO05D000080 6.9e-06 55.5 126 26.2
SEGI_36908 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 6.9e-06 55.5 102 33.3
PGSC0003DMG400020718 Solanum tuberosum HOM05D000136 ORTHO05D000080 6.9e-06 55.5 127 28.3
TAR628G0350 Trochodendron aralioides HOM05D000136 ORTHO05D000080 6.9e-06 55.5 97 33.0
Aqoxy2G01038 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 9.0e-06 55.1 98 33.7
Dinv27031 Davidia involucrata HOM05D000118 ORTHO05D000080 9.0e-06 55.1 96 33.3
Duzib168G0689 Durio zibethinus HOM05D000136 ORTHO05D000080 9.0e-06 55.1 97 30.9
Gohir.A05G091700 Gossypium hirsutum HOM05D000136 ORTHO05D000080 9.0e-06 55.1 103 31.1
Gohir.D05G092600 Gossypium hirsutum HOM05D000136 ORTHO05D000080 9.0e-06 55.1 103 31.1
Manes.07G031300 Manihot esculenta HOM05D000136 ORTHO05D000080 9.0e-06 55.1 115 28.7
Prupe.1G586200 Prunus persica HOM05D000136 ORTHO05D000080 9.0e-06 55.1 99 33.3
THA.LOC104806613 Tarenaya hassleriana HOM05D000136 ORTHO05D000080 9.0e-06 55.1 100 31.0
TPR.G21625 Trifolium pratense HOM05D000136 ORTHO05D000080 9.0e-06 55.1 102 33.3


User provided reference genes

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