Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 3.8e-188 661.4 342 100.0
MELO3C014385.2 Cucumis melo HOM05D005305 ORTHO05D006394 1.7e-164 582.8 340 90.0
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 1.5e-139 500.0 356 75.8
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 2.3e-84 316.6 286 65.4
Sed0003606 Sechium edule HOM05D005305 ORTHO05D006394 3.6e-61 239.6 229 61.6
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 8.9e-36 155.2 270 40.7
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 1.2e-35 154.8 277 40.1
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.6e-35 153.7 275 40.4
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 2.6e-35 153.7 275 40.4
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 1.3e-34 151.4 171 51.5
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 4.9e-34 149.4 272 41.2
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 6.4e-34 149.1 174 48.9
MD15G1420000 Malus domestica HOM05D005305 ORTHO05D006394 1.1e-33 148.3 175 51.4
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 2.4e-33 147.1 289 36.0
Glyma.08G183700 Glycine max HOM05D005305 ORTHO05D006394 4.1e-33 146.4 314 36.9
Actinidia33832 Actinidia chinensis HOM05D005305 ORTHO05D006394 2.1e-32 144.1 290 37.2
CSS0043111 Camellia sinensis var. sinensis HOM05D005305 ORTHO05D006394 3.5e-32 143.3 286 39.9
FAN13G2550 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.5e-32 143.3 235 40.4
RcHm_v2.0_Chr7g0223251 Rosa chinensis HOM05D005305 ORTHO05D006394 3.5e-32 143.3 313 38.7
Prupe.1G566000 Prunus persica HOM05D005305 ORTHO05D006394 4.6e-32 142.9 223 45.3
FvH4_5g29740 Fragaria vesca HOM05D005305 ORTHO05D006394 7.8e-32 142.1 292 37.7
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 1.0e-31 141.7 289 36.7
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.0e-31 141.7 237 41.8
FAN04G1743 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.9e-31 139.8 282 36.9
FAN08G2621 Fragaria x ananassa HOM05D005305 ORTHO05D006394 8.6e-31 138.7 297 37.4
Oeu000200.2 Olea europaea HOM05D005305 ORTHO05D006394 1.5e-30 137.9 301 35.9
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 4.3e-30 136.3 331 36.3
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 5.6e-30 136.0 218 40.8
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 7.3e-30 135.6 225 37.8
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 7.3e-30 135.6 217 38.7
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 9.5e-30 135.2 313 35.8
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 9.5e-30 135.2 304 36.2
Dinv19341 Davidia involucrata HOM05D005305 ORTHO05D006394 1.6e-29 134.4 292 37.3
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.1e-29 134.0 161 45.3
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.1e-29 134.0 161 45.3
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 2.1e-29 134.0 190 42.1
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 6.2e-29 132.5 218 39.4
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 6.2e-29 132.5 225 37.3
CiPaw.05G041500 Carya illinoinensis HOM05D005305 ORTHO05D006394 6.2e-29 132.5 191 47.1
QL11p019060 Quercus lobata HOM05D005305 ORTHO05D006394 6.2e-29 132.5 279 37.3
Aa31LG2G8790 Aethionema arabicum HOM05D005305 ORTHO05D006394 1.1e-28 131.7 186 44.1
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 1.1e-28 131.7 146 50.0
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.4e-28 131.3 161 47.2
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 3.1e-28 130.2 222 39.2
FAN22G2313 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-28 130.2 184 44.6
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 1.2e-27 128.3 222 37.8
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 1.2e-27 128.3 222 37.8
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 1.2e-27 128.3 222 37.8
AT1G15190 Arabidopsis thaliana HOM05D005305 ORTHO05D006394 5.8e-27 125.9 146 46.6
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 7.5e-27 125.6 146 47.3
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 9.9e-27 125.2 182 43.4
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.7e-26 124.4 190 41.1
HanXRQChr11g0337491 Helianthus annuus HOM05D005305 ORTHO05D006394 2.2e-26 124.0 161 44.7
BolC2t10994H Brassica oleracea HOM05D005305 ORTHO05D006394 2.9e-26 123.6 179 40.2
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 3.7e-26 123.2 185 42.2
ECA236G3147 Erigeron canadensis HOM05D005305 ORTHO05D006394 6.4e-26 122.5 165 46.1
A02p31660 Brassica napus HOM05D005305 ORTHO05D006394 1.1e-25 121.7 179 40.2
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 1.4e-25 121.3 159 45.9
Ciclev10001162m.g Citrus clementina HOM05D005305 ORTHO05D006394 2.4e-25 120.6 312 35.3
HanXRQChr10g0300271 Helianthus annuus HOM05D005305 ORTHO05D006394 4.1e-25 119.8 167 41.3
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 9.2e-25 118.6 209 39.2
Duzib187G0918 Durio zibethinus HOM05D005305 ORTHO05D006394 2.1e-24 117.5 161 42.9
MBI17_g24510_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 5.1e-23 112.8 212 38.7
Lsat_1_v5_gn_5_107520 Lactuca sativa HOM05D005305 ORTHO05D006394 8.6e-23 112.1 294 33.3
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 8.6e-23 112.1 232 37.9
Atru.chr6.974 Acer truncatum HOM05D005305 ORTHO05D006394 1.5e-22 111.3 307 31.9
COL.COLO4_22382 Corchorus olitorius HOM05D005305 ORTHO05D006394 3.3e-22 110.2 153 43.8
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 9.5e-22 108.6 200 39.0
FvH4_2g02450 Fragaria vesca HOM05D005305 ORTHO05D006394 1.2e-21 108.2 181 36.5
HanXRQChr10g0294801 Helianthus annuus HOM05D005305 ORTHO05D006394 1.6e-21 107.8 260 32.7
FAN15G2678 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.7e-21 106.3 181 35.9
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 4.7e-21 106.3 194 38.1
PGR042G0513 Punica granatum HOM05D005305 ORTHO05D006394 8.1e-21 105.5 225 37.8
SGA_v2.0_scaffold47G17682 Striga asiatica HOM05D005305 ORTHO05D006394 1.1e-20 105.1 189 37.0
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 1.8e-20 104.4 209 36.8
BraA02t08169Z Brassica rapa HOM05D005305 ORTHO05D006394 2.4e-20 104.0 180 36.1
Gohir.D12G092500 Gossypium hirsutum HOM05D005305 ORTHO05D006394 3.1e-20 103.6 194 36.1
Gorai.008G100000 Gossypium raimondii HOM05D005305 ORTHO05D006394 3.1e-20 103.6 194 36.1
Thecc.01G118700 Theobroma cacao HOM05D005305 ORTHO05D006394 8.9e-20 102.1 205 36.6
Manes.13G081800 Manihot esculenta HOM05D005305 ORTHO05D006394 1.5e-19 101.3 209 32.5
FvH4_2g02380 Fragaria vesca HOM05D005305 ORTHO05D006394 3.4e-19 100.1 181 35.9
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 5.8e-19 99.4 158 40.5
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 5.8e-19 99.4 156 39.1
Potri.019G002300 Populus trichocarpa HOM05D005305 ORTHO05D006394 5.8e-19 99.4 168 39.9
Sopen11g001490 Solanum pennellii HOM05D005305 ORTHO05D006394 5.8e-19 99.4 161 41.0
Gohir.A11G210433 Gossypium hirsutum HOM05D005305 ORTHO05D006394 7.6e-19 99.0 194 34.5
PGSC0003DMG400035592 Solanum tuberosum HOM05D005305 ORTHO05D006394 7.6e-19 99.0 153 43.1
MBI17_g24663_MAGBIO Magnolia biondii HOM05D005305 ORTHO05D006394 9.9e-19 98.6 321 31.2
Manes.12G149900 Manihot esculenta HOM05D005305 ORTHO05D006394 9.9e-19 98.6 151 37.7
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 1.3e-18 98.2 164 39.6
Potri.001G306800 Populus trichocarpa HOM05D005305 ORTHO05D006394 3.8e-18 96.7 170 39.4
Solyc11g005490.1 Solanum lycopersicum HOM05D005305 ORTHO05D006394 3.8e-18 96.7 200 36.5
PSO730G0002 Papaver somniferum HOM05D005305 ORTHO05D006394 4.9e-18 96.3 174 35.6
Sabra19G0004600 Salix brachista HOM05D005305 ORTHO05D006394 4.9e-18 96.3 166 37.3
CAN.G516.6 Capsicum annuum HOM05D005305 ORTHO05D006394 8.4e-18 95.5 159 40.9
TWI79G0764 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.4e-17 94.7 200 37.5
Nitab4.5_0001582g0090 Nicotiana tabacum HOM05D005305 ORTHO05D006394 3.2e-17 93.6 149 40.9
Nitab4.5_0002138g0070 Nicotiana tabacum HOM05D005305 ORTHO05D006394 5.4e-17 92.8 149 41.6
DCAR_001409 Daucus carota HOM05D005305 ORTHO05D006394 9.2e-17 92.0 264 33.3
FAN02G4273 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.1e-16 90.9 113 46.9
unitig_32.g10686 Utricularia gibba HOM05D005305 ORTHO05D006394 4.6e-16 89.7 183 37.2
Ah.03g133360 Amaranthus hybridus HOM05D005305 ORTHO05D006394 6.0e-16 89.4 214 31.8
FAN02G3216 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.0e-16 89.4 175 36.6
FvH4_4g13350 Fragaria vesca HOM05D005305 ORTHO05D006394 1.0e-15 88.6 134 42.5
Atru.chr4.616 Acer truncatum HOM05D005305 ORTHO05D006394 3.0e-15 87.0 165 35.2
FAN12G2268 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.9e-15 86.7 114 43.0
ECA234G0387 Erigeron canadensis HOM05D005305 ORTHO05D006394 5.1e-15 86.3 179 32.4
FvH4_4g36540 Fragaria vesca HOM05D005305 ORTHO05D006394 5.1e-15 86.3 114 43.0
FAN02G0608 Fragaria x ananassa HOM05D005305 ORTHO05D006394 6.6e-15 85.9 113 46.0
Sc04g0009640 Simmondsia chinensis HOM05D005305 ORTHO05D006394 1.5e-14 84.7 286 28.3
FAN20G0407 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-14 84.0 190 32.6
FAN20G1442 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-14 84.0 190 32.6
FAN20G2254 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-14 84.0 190 32.6
FAN20G2361 Fragaria x ananassa HOM05D005305 ORTHO05D006394 2.5e-14 84.0 190 32.6
FAN05G3957 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.3e-14 83.6 109 46.8
FvH4_2g04910 Fragaria vesca HOM05D005305 ORTHO05D006394 4.3e-14 83.2 165 36.4
AUR62024239 Chenopodium quinoa HOM05D005305 ORTHO05D006394 5.6e-14 82.8 239 28.5
C02p49000 Brassica napus HOM05D005305 ORTHO05D006394 9.6e-14 82.0 110 40.0
Dinv02718 Davidia involucrata HOM05D005305 ORTHO05D006394 4.7e-13 79.7 210 32.4
AUR62005501 Chenopodium quinoa HOM05D005305 ORTHO05D006394 8.1e-13 79.0 152 32.2
FAN24G2323 Fragaria x ananassa HOM05D005305 ORTHO05D006394 3.1e-12 77.0 190 31.6
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 5.8e-11 72.8 144 36.8
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.9e-10 70.5 181 33.7
FAN22G1821 Fragaria x ananassa HOM05D005305 ORTHO05D006394 4.9e-10 69.7 75 50.7
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 4.9e-10 69.7 143 34.3
ATR0311G001 Amborella trichopoda HOM05D005305 ORTHO05D006394 6.4e-10 69.3 169 33.7
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 1.1e-09 68.6 169 29.6
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 3.2e-09 67.0 143 33.6
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 2.7e-08 63.9 167 33.5
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 2.7e-08 63.9 167 32.9
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 6.0e-08 62.8 104 33.7
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 7.8e-08 62.4 147 37.4
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 1.3e-07 61.6 202 29.7
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 1.3e-07 61.6 134 32.1
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 3.0e-07 60.5 151 26.5
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 3.0e-07 60.5 143 30.8
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.9e-07 60.1 169 29.6
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 3.9e-07 60.1 148 30.4
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 3.9e-07 60.1 149 28.2
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.1e-06 58.5 100 34.0
Lalb_Chr24g0403301 Lupinus albus HOM05D002727 ORTHO05D002856 1.9e-06 57.8 163 27.6
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.5e-06 57.4 170 26.5
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 2.5e-06 57.4 189 29.1
Rhsim13G0160500 Rhododendron simsii HOM05D051295 ORTHO05D006394 2.5e-06 57.4 149 32.9
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 3.3e-06 57.0 152 30.9
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 3.3e-06 57.0 152 27.0
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 4.3e-06 56.6 135 31.1
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 4.3e-06 56.6 144 29.2
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 5.6e-06 56.2 122 33.6
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 5.6e-06 56.2 163 30.1
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 7.3e-06 55.8 146 30.8
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 7.3e-06 55.8 179 30.2
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 7.3e-06 55.8 131 30.5
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 9.6e-06 55.5 134 30.6
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 9.6e-06 55.5 136 30.9
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 9.6e-06 55.5 141 30.5


User provided reference genes

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