Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.8e-190 669.1 334 100.0
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 7.6e-173 610.5 334 90.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 8.1e-159 563.9 299 94.6
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.9e-153 545.0 336 82.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.5e-133 478.4 334 70.4
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.9e-132 475.7 327 70.9
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 5.0e-132 474.9 324 71.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 2.1e-130 469.5 347 68.0
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 3.5e-130 468.8 292 75.0
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 8.7e-129 464.2 314 71.3
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 8.7e-129 464.2 292 73.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.1e-128 463.8 297 74.1
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.5e-128 463.4 293 72.7
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.4e-128 461.1 299 72.6
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.6e-127 459.9 331 68.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.2e-127 459.5 335 66.6
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.8e-127 459.1 340 66.8
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 8.2e-127 457.6 301 72.1
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 8.2e-127 457.6 334 67.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 5.3e-126 454.9 297 71.7
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 9.0e-126 454.1 333 69.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.5e-125 453.4 296 71.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.5e-125 453.4 293 71.3
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 3.4e-125 452.2 330 67.9
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 4.5e-125 451.8 299 69.2
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.7e-124 449.9 304 71.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.2e-124 449.5 298 69.1
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.9e-124 449.1 332 65.4
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.9e-124 449.1 321 68.2
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.8e-124 448.7 325 64.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 8.5e-124 447.6 292 70.2
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.9e-123 446.4 327 64.8
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.2e-123 445.3 299 70.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.2e-122 443.7 329 64.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.2e-122 443.7 329 64.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.2e-122 443.7 335 63.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.6e-122 443.4 297 69.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-122 443.4 299 70.9
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 7.9e-122 441.0 332 63.9
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-121 440.3 292 70.5
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.9e-121 438.7 297 69.0
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.1e-121 438.3 324 65.1
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.0e-120 436.4 359 61.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.5e-120 436.0 336 62.5
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.5e-120 436.0 336 62.5
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.3e-120 435.3 328 64.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.3e-120 435.3 328 64.9
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.4e-120 434.5 328 64.9
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 9.7e-120 434.1 302 66.9
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 9.7e-120 434.1 340 62.9
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 4.8e-119 431.8 339 62.2
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.3e-118 428.3 302 67.2
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 9.1e-118 427.6 341 62.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.2e-117 427.2 293 67.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.6e-117 426.0 320 63.4
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.6e-117 426.0 292 66.4
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.6e-117 426.0 292 66.4
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.5e-117 425.2 321 66.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.0e-116 424.1 292 66.1
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.9e-116 422.5 339 61.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 5.0e-116 421.8 316 65.5
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.4e-115 420.2 295 66.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.4e-115 420.2 341 61.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.9e-115 419.9 329 63.5
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.9e-115 419.9 337 62.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.5e-115 419.5 337 62.0
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.5e-115 419.5 326 63.5
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 5.5e-115 418.3 330 62.4
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 7.2e-115 417.9 337 62.9
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.4e-115 417.5 327 63.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 9.4e-115 417.5 316 65.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 9.4e-115 417.5 312 65.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.6e-114 415.6 338 62.4
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 4.7e-114 415.2 303 66.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 6.1e-114 414.8 307 65.5
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.0e-113 414.1 313 65.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.4e-113 413.7 328 62.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.3e-113 412.9 326 63.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 5.1e-113 411.8 306 65.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 5.1e-113 411.8 296 65.9
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 6.7e-113 411.4 294 66.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-112 410.6 287 67.6
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.5e-112 410.2 305 65.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.0e-112 409.8 305 65.6
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 3.3e-112 409.1 320 63.1
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.3e-112 409.1 330 63.9
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.3e-111 407.1 305 65.2
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 2.2e-111 406.4 327 62.4
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.7e-111 405.6 303 64.0
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.8e-111 405.2 335 61.8
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.4e-110 403.7 303 63.7
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.4e-110 402.9 323 60.4
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-109 400.6 296 64.9
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-109 400.6 296 64.9
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.6e-109 400.2 296 65.2
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 5.9e-109 398.3 299 63.2
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.7e-108 396.7 352 55.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.5e-107 393.7 315 61.0
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-107 392.9 304 63.2
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.0e-105 387.5 297 62.0
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.4e-105 387.1 333 56.2
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 4.0e-105 385.6 296 60.8
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.5e-104 383.6 293 61.1
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.3e-104 382.5 293 63.5
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 4.1e-102 375.6 359 56.0
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-101 373.2 301 62.8
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.7e-100 370.2 300 58.0
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.1e-99 367.5 265 64.5
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.8e-97 360.1 330 57.3
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.7e-96 355.1 317 57.1
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.8e-95 352.1 334 53.3
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 3.5e-93 345.9 291 58.4
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 5.0e-92 342.0 344 54.7
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 8.0e-90 334.7 286 55.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.7e-87 327.0 308 52.6
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.0e-85 320.1 272 59.2
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.3e-83 312.8 311 54.3
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.6e-80 303.1 285 52.6
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 2.4e-78 296.6 253 61.7
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.6e-75 285.4 308 49.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.9e-73 278.1 369 41.2
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.7e-71 273.9 288 46.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.9e-71 272.3 196 66.3
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.5e-67 260.8 295 43.4
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.7e-66 255.8 289 42.9
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-64 250.4 198 62.6
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.3e-63 247.7 265 49.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.4e-62 244.2 297 42.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.5e-59 231.5 158 66.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 5.2e-57 225.7 260 43.8
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.2e-55 220.3 207 53.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.1e-49 199.9 231 46.3
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 4.6e-37 159.5 279 34.4
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.1e-35 154.8 118 57.6
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.1e-35 154.8 84 83.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.2e-29 134.8 99 63.6
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 4.6e-29 132.9 114 56.1
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 4.3e-27 126.3 73 79.5
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.4e-25 121.3 112 54.5
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.0e-24 117.5 76 72.4
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.6e-24 117.1 178 42.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 4.5e-24 116.3 169 41.4
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.8e-24 115.9 68 76.5
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.9e-21 105.5 87 56.3
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 3.9e-20 103.2 96 51.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.7e-20 102.4 116 49.1
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.1e-19 101.7 174 36.2
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-18 96.7 58 81.0
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 2.4e-17 94.0 58 75.9
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-16 91.7 77 51.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.6e-13 79.7 77 58.4
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.1e-12 76.3 63 55.6
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 9.7e-11 72.0 47 68.1
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.9e-07 60.5 61 47.5
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 8.5e-07 58.9 51 51.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 9.4e-06 55.5 92 31.5


User provided reference genes

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