Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.4e-239 831.2 420 100.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.5e-226 789.3 420 94.3
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.6e-199 699.5 420 84.5
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.5e-138 496.9 483 57.8
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.0e-118 431.0 425 54.6
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.3e-116 424.1 423 53.4
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.1e-115 421.0 425 54.1
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 2.5e-109 399.8 424 50.7
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 9.7e-109 397.9 434 50.9
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 4.8e-108 395.6 426 50.9
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 2.1e-103 380.2 422 49.1
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.6e-103 379.4 423 49.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 5.1e-102 375.6 424 49.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.1e-101 374.4 418 50.2
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 9.7e-101 371.3 422 49.1
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.8e-99 367.1 428 48.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.8e-99 367.1 417 49.2
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.3e-99 365.5 417 48.9
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 6.9e-99 365.2 417 48.9
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-98 364.4 417 49.2
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 7.7e-98 361.7 441 46.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-97 360.9 425 49.4
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.4e-96 354.8 426 46.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-95 354.4 417 48.2
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.6e-95 354.0 425 47.1
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 2.7e-95 353.2 428 45.6
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 6.1e-95 352.1 421 45.8
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.0e-94 349.7 424 45.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.5e-93 347.4 426 46.0
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.0e-93 347.1 434 45.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.7e-93 345.5 420 47.4
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-92 343.2 420 47.1
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 8.2e-92 341.7 429 47.3
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.4e-91 340.1 440 45.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.1e-91 338.2 429 45.7
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 9.1e-91 338.2 431 43.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.0e-89 334.7 429 45.5
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.8e-89 332.8 425 45.6
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-88 330.5 427 45.4
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 2.5e-88 330.1 433 43.2
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 4.2e-88 329.3 422 44.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.6e-87 326.2 435 41.6
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.8e-86 323.9 398 46.0
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.8e-86 323.9 423 44.9
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 6.7e-86 322.0 369 48.5
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 8.2e-84 315.1 428 45.3
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.4e-83 314.3 425 45.4
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 7.0e-83 312.0 442 42.1
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.7e-82 310.1 335 51.6
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 2.2e-81 307.0 349 49.6
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 4.2e-80 302.8 422 44.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.2e-80 302.8 424 45.3
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 6.1e-79 298.9 427 44.3
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.6e-77 293.5 422 44.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.4e-77 292.7 423 43.7
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 9.8e-77 291.6 427 42.9
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.7e-76 290.8 452 39.2
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.3e-76 288.9 434 41.9
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 6.3e-76 288.9 427 42.6
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.1e-75 286.6 421 41.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.4e-75 285.8 439 40.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 7.0e-75 285.4 396 43.7
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 7.0e-75 285.4 422 43.1
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-74 284.6 306 50.3
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-73 280.4 421 41.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 5.0e-73 279.3 427 41.7
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 6.5e-73 278.9 426 41.8
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 8.6e-73 278.5 438 38.1
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.6e-73 278.5 418 42.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 2.5e-72 276.9 425 41.2
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.5e-72 275.8 425 40.7
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.5e-72 275.8 425 40.7
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 5.5e-72 275.8 427 40.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 3.6e-71 273.1 428 40.7
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 3.6e-71 273.1 423 40.2
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 3.6e-71 273.1 436 41.3
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.4e-70 271.2 425 41.9
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.3e-70 270.4 396 43.4
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.2e-69 268.1 441 38.3
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.0e-69 267.3 440 37.3
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 7.5e-69 265.4 451 38.1
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.3e-68 264.6 438 41.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.2e-68 263.8 426 39.4
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 2.8e-68 263.5 427 41.7
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 3.7e-68 263.1 446 38.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.4e-67 261.2 426 39.0
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 3.1e-67 260.0 433 38.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 7.0e-67 258.8 349 41.8
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.2e-66 258.1 438 37.4
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.8e-66 255.4 255 52.9
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.3e-65 254.6 425 37.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.8e-65 253.1 433 39.3
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 5.0e-65 252.7 446 38.3
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.9e-64 250.8 425 36.0
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 3.3e-64 250.0 438 35.6
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 5.6e-64 249.2 436 36.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 9.5e-64 248.4 430 37.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.2e-63 248.1 426 37.3
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.1e-63 247.3 255 51.4
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.1e-63 247.3 438 35.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.8e-63 246.9 450 36.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-62 244.6 426 34.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 1.4e-62 244.6 436 35.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 4.0e-62 243.0 426 34.0
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 5.8e-61 239.2 423 34.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 9.8e-61 238.4 264 50.4
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 3.7e-60 236.5 425 34.1
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.4e-59 232.6 414 40.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 4.6e-58 229.6 423 33.3
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.3e-57 228.0 425 34.4
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.9e-57 226.5 426 34.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.6e-57 225.7 426 34.5
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-56 224.6 423 34.5
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.9e-56 224.2 413 38.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 7.3e-56 222.2 429 35.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 8.0e-55 218.8 425 33.6
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 8.9e-54 215.3 434 35.3
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.4e-51 207.2 415 32.5
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.5e-50 203.4 207 50.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.0e-49 200.3 426 32.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 8.6e-49 198.7 419 33.7
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.5e-48 198.0 336 41.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.7e-47 193.0 420 31.4
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 6.2e-47 192.6 419 31.5
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.7e-44 183.3 424 31.4
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 4.1e-43 179.9 431 31.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.5e-42 176.8 348 35.1
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 3.0e-41 173.7 293 38.9
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.8e-38 164.5 366 33.6
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 8.4e-36 155.6 258 34.5
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.5e-32 144.1 227 39.6
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 4.7e-31 139.8 168 44.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.0e-29 134.4 174 42.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 3.8e-28 130.2 366 30.6
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-27 128.3 213 36.6
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 4.3e-24 116.7 151 43.0
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 9.6e-24 115.5 151 42.4
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-23 114.4 144 43.8
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.8e-23 114.0 151 41.7
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.8e-23 114.0 151 41.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.2e-19 100.5 87 59.8
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 4.2e-19 100.1 128 44.5
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 5.6e-16 89.7 167 31.7
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.1e-09 66.6 60 60.0
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 6.2e-07 59.7 57 52.6
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 6.2e-07 59.7 57 52.6
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 6.2e-07 59.7 171 28.1
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-06 57.8 62 41.9
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-06 57.8 71 39.4
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 3.1e-06 57.4 128 38.3


User provided reference genes

Program Settings