Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.4e-172 608.2 307 100.0
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.5e-156 554.7 310 90.6
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.4e-151 538.5 310 89.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.2e-140 503.4 314 81.8
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 6.6e-139 497.7 309 82.2
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.7e-126 456.4 321 69.8
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 3.3e-122 442.2 312 71.8
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-121 439.9 328 68.9
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.8e-121 439.1 316 69.6
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 6.2e-121 438.0 303 71.0
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.4e-120 436.8 312 70.8
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.4e-120 436.8 306 69.9
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.4e-120 436.8 310 69.7
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.4e-120 436.8 304 70.4
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 3.1e-120 435.6 303 71.0
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 6.8e-120 434.5 307 68.7
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 8.9e-120 434.1 314 69.1
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-119 433.7 296 71.3
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.2e-119 433.7 304 70.4
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.5e-119 433.3 304 70.1
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 4.4e-119 431.8 306 68.0
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 4.4e-119 431.8 312 69.9
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 4.9e-118 428.3 310 68.1
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 6.4e-118 427.9 318 67.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 8.3e-118 427.6 303 71.3
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 8.3e-118 427.6 309 67.6
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.1e-117 427.2 303 69.3
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.1e-117 427.2 303 67.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 3.2e-117 425.6 308 70.1
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 5.4e-117 424.9 308 69.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.4e-117 424.9 303 70.0
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 5.4e-117 424.9 306 68.6
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 9.2e-117 424.1 309 69.3
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.2e-117 424.1 329 66.3
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.2e-116 423.7 319 67.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.6e-116 423.3 302 69.2
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.6e-116 423.3 311 66.9
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.6e-116 423.3 308 67.9
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.7e-116 422.5 315 67.3
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 2.7e-116 422.5 313 66.1
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.7e-116 422.5 309 68.3
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 6.0e-116 421.4 300 67.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 7.8e-116 421.0 304 66.8
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.3e-115 420.2 311 66.9
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.3e-115 419.5 313 66.5
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.0e-115 419.1 311 67.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 3.0e-115 419.1 312 66.7
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.9e-115 418.7 313 66.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 5.1e-115 418.3 310 67.4
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 8.6e-115 417.5 303 67.7
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 8.6e-115 417.5 299 69.2
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.5e-114 416.8 306 69.0
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.9e-114 416.4 302 67.5
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-114 416.0 305 66.9
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.5e-114 416.0 316 66.1
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.5e-114 416.0 316 66.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 2.5e-114 416.0 302 67.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 3.3e-114 415.6 314 68.2
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.3e-114 415.6 313 65.8
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 4.3e-114 415.2 316 63.9
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 4.3e-114 415.2 305 69.5
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.8e-113 412.5 316 65.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 8.1e-113 411.0 308 66.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 1.8e-112 409.8 313 65.2
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.3e-112 409.5 310 66.8
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 8.9e-112 407.5 304 66.4
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 5.8e-111 404.8 303 67.0
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 2.9e-110 402.5 335 63.0
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.9e-109 399.8 314 65.3
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 5.4e-109 398.3 301 65.8
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 9.2e-109 397.5 308 64.9
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.6e-108 396.7 306 66.0
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 2.7e-108 396.0 306 65.0
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.5e-106 390.2 275 69.1
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 5.6e-106 388.3 308 63.6
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 9.6e-106 387.5 304 62.8
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.8e-105 386.0 334 59.6
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 8.1e-105 384.4 304 63.2
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.4e-104 383.6 327 61.5
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.4e-104 383.6 312 64.1
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 3.1e-104 382.5 309 61.5
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 3.1e-104 382.5 306 63.1
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 4.0e-104 382.1 308 62.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.0e-104 382.1 308 62.0
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.2e-103 380.6 308 62.7
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 3.4e-103 379.0 304 61.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 5.8e-103 378.3 317 60.6
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.2e-100 370.5 306 60.8
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.2e-100 370.5 312 62.5
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 6.0e-100 368.2 307 62.2
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.0e-99 367.5 306 59.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.0e-99 367.5 317 58.7
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.8e-94 349.0 307 61.9
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.2e-92 344.0 303 57.4
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 7.9e-92 341.3 303 59.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.3e-91 339.7 289 60.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.0e-91 339.3 377 50.1
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.3e-89 334.0 301 55.8
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 2.8e-89 332.8 298 56.0
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.8e-89 332.8 298 57.0
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 3.6e-89 332.4 266 63.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.4e-88 329.7 299 56.5
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.2e-87 327.4 226 70.8
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.5e-84 315.8 272 61.0
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.6e-84 315.5 220 69.5
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 4.5e-79 298.9 351 48.7
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 4.2e-77 292.4 230 65.7
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.5e-71 272.3 231 60.2
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 2.1e-68 263.5 336 44.9
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.8e-67 260.4 202 65.3
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.7e-65 252.7 175 69.7
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 9.1e-64 248.1 198 62.6
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 8.5e-62 241.5 182 63.2
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.1e-52 210.3 217 52.1
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.4e-48 197.6 149 63.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.4e-48 196.8 276 44.2
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.3e-48 195.7 228 50.0
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-42 177.9 184 54.9
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 5.9e-39 165.6 162 56.8
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.4e-34 149.4 298 35.6
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 4.8e-33 146.0 108 63.9
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 7.7e-31 138.7 293 35.8
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.7e-30 137.5 124 60.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.7e-25 119.8 121 58.7
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.5e-21 107.1 60 95.0
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 2.8e-20 103.6 121 53.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.1e-20 102.4 143 40.6
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 8.0e-20 102.1 118 46.6
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.0e-19 101.7 83 62.7
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.8e-19 100.9 166 41.6
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.3e-19 100.5 63 81.0
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.2e-19 99.4 74 63.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 8.3e-17 92.0 89 57.3
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 8.3e-17 92.0 69 66.7
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.4e-16 90.5 73 61.6
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 5.4e-16 89.4 104 49.0
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 5.0e-14 82.8 83 54.2
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.6e-13 79.3 83 54.2
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.8e-11 72.4 63 58.7


User provided reference genes

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