Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 5.7e-192 674.1 343 100.0
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 6.3e-183 644.0 343 95.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 5.2e-177 624.4 344 92.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.1e-171 606.7 343 90.1
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 8.0e-170 600.5 343 88.9
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 2.6e-136 489.2 344 72.7
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 2.2e-135 486.1 344 72.7
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.2e-134 482.3 350 71.4
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.1e-132 474.9 344 72.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.0e-128 463.0 344 70.3
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 5.8e-128 461.5 343 71.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-126 456.8 339 71.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.0e-125 451.4 344 69.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.0e-124 450.7 343 69.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.9e-124 448.7 346 69.4
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.1e-123 447.2 346 70.2
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.5e-123 446.0 346 69.4
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 3.3e-123 445.7 346 69.1
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.3e-123 445.7 348 68.4
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 4.3e-123 445.3 344 68.3
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.1e-122 443.0 344 67.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 8.1e-122 441.0 356 67.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.1e-121 440.7 344 66.9
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 4.0e-121 438.7 348 66.1
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.0e-121 438.7 344 68.3
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 9.0e-121 437.6 347 68.3
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.2e-120 437.2 344 67.7
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.4e-120 435.6 350 67.7
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.4e-120 435.6 344 68.3
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.5e-120 435.3 348 67.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.7e-119 433.3 348 66.7
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.9e-119 432.6 344 68.0
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 8.4e-119 431.0 345 66.1
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.4e-118 430.3 345 66.7
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.7e-117 426.0 344 66.0
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.8e-116 423.3 344 65.7
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.0e-116 422.5 344 66.0
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-115 420.2 345 65.5
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-115 420.2 345 65.5
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.5e-115 420.2 344 65.7
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.3e-115 418.7 344 66.3
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.3e-114 417.2 344 64.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.7e-114 415.6 344 65.1
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 8.2e-114 414.5 349 66.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 1.1e-113 414.1 344 65.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.5e-112 408.7 344 63.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.8e-112 408.3 345 62.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.0e-111 407.5 346 65.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-111 407.1 344 64.2
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.2e-111 406.4 346 63.9
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 4.9e-111 405.2 348 63.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.1e-109 399.8 333 64.6
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 3.5e-109 399.1 348 64.1
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 4.6e-109 398.7 344 64.2
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 3.0e-108 396.0 347 63.7
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 5.1e-108 395.2 409 55.3
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.1e-108 395.2 343 63.6
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.7e-108 394.8 414 55.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.5e-107 392.9 344 62.2
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 4.3e-107 392.1 346 63.6
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.3e-106 390.6 389 58.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 2.2e-106 389.8 343 62.7
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.3e-106 388.3 348 60.9
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.1e-105 387.5 345 60.6
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.1e-105 387.5 349 61.9
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.4e-105 387.1 344 61.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 3.1e-105 386.0 344 62.8
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 5.3e-105 385.2 349 61.9
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 6.9e-105 384.8 395 56.7
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.5e-104 383.6 344 61.6
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.5e-104 383.6 346 60.1
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.4e-104 382.5 343 61.5
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-103 380.6 297 67.3
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.3e-103 380.6 346 61.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.2e-103 379.8 346 59.5
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 5.0e-103 378.6 346 61.3
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.2e-102 374.8 351 60.4
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 1.2e-101 374.0 347 61.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.6e-101 373.6 347 61.1
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.8e-100 370.2 347 60.5
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 5.1e-100 368.6 338 60.7
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 8.8e-100 367.9 348 60.1
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.5e-99 367.1 344 58.4
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-99 367.1 348 60.1
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.5e-99 367.1 346 59.2
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.0e-99 366.7 346 60.1
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 4.3e-99 365.5 347 60.5
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 5.7e-99 365.2 340 57.9
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.3e-98 364.0 344 59.0
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.3e-98 364.0 344 61.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.2e-98 363.2 345 58.8
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.1e-97 360.9 345 59.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 1.4e-97 360.5 344 59.9
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.4e-97 359.8 348 58.6
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.1e-97 359.4 322 63.7
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.1e-97 359.4 345 59.4
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.2e-96 357.5 357 58.8
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.0e-96 356.7 346 59.2
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.6e-96 356.3 345 58.6
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.7e-96 354.8 349 57.0
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 8.5e-95 351.3 346 56.9
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.1e-94 350.9 283 65.7
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.9e-94 350.1 348 57.8
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-94 349.7 346 56.6
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.5e-94 349.7 344 58.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 9.4e-94 347.8 348 57.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 9.4e-94 347.8 344 56.1
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-93 347.1 338 58.9
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.6e-93 347.1 338 58.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.7e-93 346.3 339 59.0
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.7e-93 346.3 339 59.0
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.6e-93 345.9 353 55.8
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 6.7e-92 341.7 350 55.4
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 8.8e-92 341.3 269 67.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.5e-91 340.5 340 56.2
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.7e-90 337.0 346 54.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.8e-90 336.3 326 58.6
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.8e-90 336.3 326 58.6
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.7e-90 335.9 338 57.1
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.8e-90 335.5 344 55.8
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 8.2e-90 334.7 344 54.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 3.1e-89 332.8 339 57.8
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.3e-89 332.0 347 55.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 5.3e-89 332.0 328 58.5
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.3e-89 332.0 352 56.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 9.1e-89 331.3 347 59.4
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.6e-88 329.7 340 52.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.6e-88 329.7 347 54.2
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 5.9e-88 328.6 346 55.2
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 7.7e-88 328.2 353 54.7
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.2e-87 326.6 344 55.2
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 5.0e-87 325.5 326 56.7
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 5.0e-87 325.5 346 54.6
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-86 323.6 347 54.5
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.6e-85 320.5 346 53.8
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.0e-84 316.2 351 53.0
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.8e-82 309.7 248 66.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 2.4e-81 306.6 350 50.6
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 4.2e-78 295.8 351 51.0
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.6e-75 286.6 254 61.8
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.6e-75 286.6 277 58.5
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.0e-68 264.6 209 67.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 5.4e-65 252.3 343 50.1
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 1.8e-60 237.3 250 53.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 5.4e-57 225.7 337 43.6
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.7e-48 196.8 348 39.1
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.9e-46 190.7 324 41.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 8.9e-36 155.2 411 30.9
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.0e-35 154.1 230 43.9
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.1e-31 139.4 156 54.5
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.6e-27 127.1 158 49.4
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 5.8e-19 99.4 226 32.7
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 4.2e-17 93.2 90 57.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.1e-14 85.1 162 36.4
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.0e-11 74.3 245 26.9
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 4.5e-11 73.2 186 27.4
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 6.4e-10 69.3 180 31.7
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.4e-09 67.4 141 36.2
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.1e-06 58.5 251 24.7
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 1.1e-06 58.5 350 22.0
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 2.5e-06 57.4 140 26.4


User provided reference genes

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