Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.1e-135 485.7 247 100.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.8e-134 482.6 247 99.2
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 2.5e-120 435.6 252 90.9
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 5.1e-118 427.9 251 88.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 2.2e-97 359.4 253 74.3
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 3.6e-95 352.1 252 74.6
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 3.6e-95 352.1 253 75.1
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 8.0e-95 350.9 253 73.1
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 8.0e-95 350.9 253 74.7
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.0e-94 349.0 253 74.3
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 4.0e-94 348.6 251 73.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.0e-93 346.3 253 72.7
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 2.6e-93 345.9 247 73.7
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 3.4e-93 345.5 252 73.0
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.8e-92 342.4 255 72.9
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.7e-92 342.0 253 71.5
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 6.3e-92 341.3 253 71.1
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-91 340.5 253 71.1
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.1e-91 340.5 253 71.1
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-91 340.1 249 73.5
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.8e-91 339.7 253 71.1
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.1e-91 339.0 253 73.5
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 4.1e-91 338.6 254 72.8
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 7.0e-91 337.8 254 71.7
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.2e-90 337.0 253 71.5
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 1.2e-90 337.0 253 71.5
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.0e-89 334.0 253 71.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.3e-89 333.6 253 72.3
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.7e-89 333.2 253 71.5
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 5.0e-89 331.6 253 70.4
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 8.5e-89 330.9 250 71.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.2e-88 328.9 253 70.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.2e-88 328.9 249 71.5
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 9.4e-88 327.4 253 70.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.2e-87 327.0 253 70.0
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.2e-87 327.0 248 71.4
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.6e-87 326.6 253 71.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 2.7e-87 325.9 250 69.6
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 4.7e-87 325.1 251 70.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 4.7e-87 325.1 253 70.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.1e-87 324.7 253 70.8
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 3.0e-86 322.4 253 70.0
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.5e-85 320.1 252 68.7
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.0e-85 319.7 252 68.7
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.0e-85 319.7 252 68.3
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.6e-85 319.3 252 68.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.6e-85 319.3 246 69.9
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 3.4e-85 318.9 252 68.7
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 3.4e-85 318.9 252 68.7
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.4e-85 318.9 252 68.7
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 3.4e-85 318.9 252 68.7
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 5.7e-85 318.2 253 67.2
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 9.8e-85 317.4 244 68.4
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 9.8e-85 317.4 253 69.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.3e-84 314.7 252 67.5
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 6.3e-84 314.7 251 68.5
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 8.3e-84 314.3 272 64.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.1e-83 313.9 254 68.9
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.4e-83 313.5 252 67.1
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.4e-83 313.5 246 68.7
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.4e-83 313.5 246 69.1
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.8e-83 313.2 244 69.7
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.1e-83 312.0 253 66.4
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 9.1e-83 310.8 243 71.6
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.6e-82 310.1 251 65.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.0e-82 309.7 249 65.5
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.5e-82 308.9 249 64.7
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.5e-82 308.9 249 64.7
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.7e-81 306.6 248 67.3
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.3e-81 306.2 247 67.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 3.8e-81 305.4 256 65.2
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.8e-81 305.4 249 65.1
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.8e-81 305.4 249 64.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 5.0e-81 305.1 246 65.9
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.5e-80 303.5 249 64.3
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.2e-79 300.4 245 67.3
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 3.6e-79 298.9 251 66.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 4.7e-79 298.5 288 59.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 3.0e-78 295.8 252 64.3
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 5.2e-78 295.0 246 64.2
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 8.9e-78 294.3 247 65.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.5e-77 293.5 249 63.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.0e-77 293.1 252 64.7
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.7e-77 291.6 234 67.9
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.7e-76 290.0 252 64.3
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 4.9e-76 288.5 254 63.4
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.2e-74 283.9 248 61.3
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.9e-74 281.6 250 62.0
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 5.9e-74 281.6 249 64.3
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.9e-72 276.6 254 63.0
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 3.6e-71 272.3 217 69.1
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 3.6e-71 272.3 215 70.7
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.4e-70 270.4 213 70.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 8.9e-70 267.7 254 59.8
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 5.8e-69 265.0 309 53.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 2.4e-67 259.6 241 59.8
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 3.2e-67 259.2 219 69.9
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 4.1e-67 258.8 224 66.1
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 9.2e-67 257.7 243 61.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 9.2e-67 257.7 242 63.6
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.0e-66 256.5 230 63.0
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.0e-65 254.2 238 60.5
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.3e-65 253.1 251 56.6
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.5e-64 249.6 255 54.9
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.6e-63 246.9 241 58.9
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 3.6e-63 245.7 259 57.9
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.1e-62 244.2 251 58.6
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.2e-62 241.9 248 54.4
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 5.2e-62 241.9 213 67.6
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 3.4e-61 239.2 244 57.4
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.7e-60 235.7 257 56.0
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.2e-59 232.6 256 55.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 7.1e-59 231.5 243 54.7
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 7.1e-59 231.5 252 53.2
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 7.8e-58 228.0 252 54.8
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 7.8e-58 228.0 252 54.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 6.6e-57 224.9 207 65.2
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 3.3e-56 222.6 261 52.1
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 3.3e-56 222.6 189 67.2
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 6.2e-55 218.4 255 53.3
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 6.2e-55 218.4 255 53.3
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.4e-54 217.2 255 53.3
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 4.0e-54 215.7 260 52.7
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 9.9e-53 211.1 254 52.8
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 4.6e-50 202.2 262 45.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.2e-47 191.8 139 70.5
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.4e-38 164.1 132 70.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.4e-37 159.1 102 81.4
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 2.1e-34 150.2 75 90.7
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.1e-32 144.4 222 45.0
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.4e-30 137.5 152 44.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 7.1e-27 125.2 136 44.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 7.9e-26 121.7 261 35.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.9e-25 119.4 212 42.0
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.1e-23 113.6 121 47.1
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.4e-22 110.2 157 37.6
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.2e-20 103.6 132 40.2
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.8e-20 102.8 120 44.2
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 4.6e-18 95.9 114 57.9
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.6e-15 87.4 44 81.8
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 9.0e-14 81.6 38 89.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.4e-13 79.7 37 89.2
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 7.6e-13 78.6 37 89.2
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.3e-12 77.8 51 66.7
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 6.5e-12 75.5 35 88.6
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 8.4e-12 75.1 106 45.3
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 3.2e-11 73.2 37 83.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.6e-07 60.8 35 77.1
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.0e-06 55.1 121 33.1


User provided reference genes

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