Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 2011.5 1074 100.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1865.1 1074 90.6
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1825.1 1090 88.8
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1683.7 1040 86.6
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1618.6 1074 77.8
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1612.8 1075 77.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1604.3 1080 76.1
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1603.6 1077 76.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1602.4 1074 77.4
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1602.4 1075 76.6
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1597.0 1087 75.8
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1592.0 1075 76.5
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1590.9 1075 76.4
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1587.0 1079 75.7
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1585.1 1075 75.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1582.4 1079 75.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1581.2 1073 75.3
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1578.5 1073 75.9
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1577.0 1073 75.6
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1575.1 1077 76.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1568.5 1085 75.2
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1567.7 1080 74.7
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1567.7 1073 75.4
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1564.3 1079 75.3
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1563.1 1077 74.7
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1562.7 1075 75.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1562.4 1075 75.0
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1562.0 1075 75.5
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1561.6 1075 75.3
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1558.5 1078 74.9
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1557.3 1073 74.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1556.6 1073 75.0
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1550.0 1073 75.0
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1549.6 1074 74.9
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1548.9 1046 75.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1537.3 1080 73.2
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1535.0 1074 74.2
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1528.5 1072 72.7
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1523.1 1030 76.1
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1522.7 1074 73.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1520.8 1080 72.5
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1514.2 1080 72.4
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1501.9 1076 72.0
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1500.0 1081 72.3
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1489.9 1081 72.1
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1484.5 1077 71.8
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1077 71.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1480.7 1077 72.0
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1478.4 1078 70.8
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1477.6 1077 71.9
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1470.7 1076 70.7
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1464.5 1147 68.5
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1462.2 1097 70.5
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1460.7 1090 70.1
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1434.1 1082 69.7
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1433.7 989 75.3
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1422.9 1104 68.9
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1421.4 1077 69.0
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1419.1 1077 68.8
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1417.9 1073 70.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1415.6 1077 68.4
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1403.7 1093 67.8
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1403.3 1093 67.8
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1401.3 1076 67.6
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1400.6 1078 68.2
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1393.6 1077 67.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1393.3 1075 68.8
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1385.9 1111 66.0
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1384.4 1112 65.9
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1380.9 1076 67.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1378.2 1082 67.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1375.9 1097 66.0
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1375.5 1000 70.8
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1375.5 1075 67.2
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1373.6 1073 69.2
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1372.8 1150 66.5
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1367.8 1125 65.6
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1366.3 1065 67.6
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1365.5 1077 67.0
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1363.6 1105 67.0
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1357.4 1176 63.6
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1354.7 1078 66.7
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1354.3 1063 66.8
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1353.6 1097 65.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1353.6 1097 65.3
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1348.2 1075 66.8
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1343.2 1091 66.4
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1335.9 1077 65.7
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1333.5 1097 65.0
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1330.9 947 72.1
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1327.8 1114 64.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1313.5 1081 64.9
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1301.2 1106 62.4
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1285.0 1076 64.4
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1282.3 1178 61.6
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1281.5 1062 65.8
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1273.1 1069 61.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1262.7 1025 64.3
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1258.8 1076 60.2
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1255.0 1076 61.0
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1252.3 1059 64.9
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1210.3 1261 56.3
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1195.6 1065 61.8
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1190.3 1081 61.4
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1153.7 882 69.4
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1119.4 744 77.2
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1116.3 905 64.2
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1109.0 915 65.6
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 2.4e-297 1025.8 978 59.2
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.1e-292 1008.8 1092 50.6
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.9e-290 1002.3 1085 50.9
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 7.1e-289 997.7 724 72.5
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.7e-272 942.6 631 77.2
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.3e-269 933.7 1087 48.8
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-259 899.8 1080 47.6
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 9.6e-254 880.9 801 60.7
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.9e-246 856.7 775 62.5
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 1.2e-243 847.4 1059 45.7
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 7.0e-212 741.9 570 70.5
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.3e-210 737.6 515 73.2
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 4.1e-204 716.1 566 67.0
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.9e-201 707.2 586 64.7
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 3.3e-201 706.4 707 56.4
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 7.3e-193 678.7 532 69.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.1e-192 677.2 566 65.2
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 3.7e-189 666.4 805 47.5
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.0e-178 631.7 840 46.7
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 3.0e-178 630.2 1235 35.2
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 3.2e-164 583.6 427 71.0
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 3.8e-149 533.5 429 66.2
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.5e-142 510.0 374 71.7
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.4e-140 505.0 348 76.1
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.5e-134 483.4 393 62.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 5.5e-124 449.9 359 68.0
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.5e-118 431.8 320 71.9
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.9e-117 427.6 366 65.3
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 3.5e-110 404.1 282 75.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 5.0e-109 400.2 270 78.1
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.6e-105 387.9 353 61.8
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 2.6e-89 334.7 229 75.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.6e-85 320.1 369 49.6
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 4.7e-75 287.3 178 79.2
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.8e-67 261.5 194 72.2
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 5.6e-60 237.3 143 79.0
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.3e-56 226.1 162 71.0
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 7.1e-55 220.3 133 82.0
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.2e-51 209.5 129 82.9
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.6e-49 201.8 108 88.9
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 4.6e-46 191.0 139 66.9
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 4.6e-38 164.5 118 66.9
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 8.7e-37 160.2 169 52.7
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 3.3e-36 158.3 103 71.8
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.6e-35 154.8 96 76.0
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 4.8e-35 154.5 103 73.8
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.4e-34 152.9 85 83.5
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 1.7e-32 146.0 86 76.7
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.9e-32 144.4 87 75.9
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.6e-30 137.9 110 66.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-28 130.6 92 75.0
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.7e-27 128.3 205 34.1
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-27 127.9 79 74.7
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 6.2e-27 127.5 181 43.1
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 4.0e-26 124.8 79 70.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 7.6e-25 120.6 86 68.6
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 7.9e-22 110.5 86 68.6
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 1.1e-20 106.7 81 59.3
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 1.7e-16 92.8 100 51.0
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.4e-16 90.5 62 72.6
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 8.4e-16 90.5 62 72.6
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 3.5e-14 85.1 49 87.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.5e-14 85.1 65 67.7
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 7.4e-12 77.4 59 66.1
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 7.4e-12 77.4 59 66.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 8.2e-11 73.9 58 62.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 4.1e-10 71.6 68 57.4
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.5e-09 69.7 87 50.6
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 5.9e-09 67.8 49 75.5
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 6.5e-08 64.3 52 55.8


User provided reference genes

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