Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 8.0e-247 856.7 440 100.0
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 8.8e-246 853.2 440 99.5
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 8.5e-241 836.6 440 97.3
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.4e-230 802.7 440 93.0
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 5.6e-200 701.0 428 81.3
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.7e-199 698.0 428 80.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.7e-199 698.0 428 80.6
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 8.1e-199 697.2 430 80.9
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-198 696.4 428 80.1
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 3.1e-198 695.3 428 80.1
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.0e-198 694.9 430 82.6
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.2e-198 694.5 442 79.0
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.2e-198 694.5 442 79.0
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.9e-198 693.7 428 80.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-197 691.8 443 80.1
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.4e-197 691.4 428 82.5
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.8e-197 691.0 428 82.5
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-197 691.0 428 80.4
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 5.8e-197 691.0 430 79.3
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 9.9e-197 690.3 429 79.3
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.9e-196 688.7 430 80.2
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.9e-196 688.7 428 82.5
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 3.8e-196 688.3 429 79.3
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 8.4e-196 687.2 433 79.2
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.4e-195 686.4 430 78.1
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.4e-195 686.4 428 80.1
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 7.1e-195 684.1 430 77.4
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.6e-194 682.9 426 80.8
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.7e-194 682.2 440 78.6
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 2.7e-194 682.2 430 81.2
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.7e-193 679.5 429 78.8
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.3e-193 679.1 430 80.2
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-193 678.7 432 77.8
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 3.0e-193 678.7 432 77.8
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.1e-193 677.9 440 78.6
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 5.1e-193 677.9 440 77.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.3e-192 675.2 429 78.8
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 7.3e-192 674.1 428 77.3
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.6e-191 672.9 446 78.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.6e-191 672.9 429 78.3
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.1e-191 672.5 428 79.2
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.6e-191 671.8 433 77.1
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.7e-191 671.4 428 77.8
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 4.7e-191 671.4 428 78.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 4.7e-191 671.4 428 78.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 6.2e-191 671.0 427 79.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 8.1e-191 670.6 428 78.0
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 8.1e-191 670.6 428 78.0
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 77.8
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.4e-190 669.1 428 78.0
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.4e-190 669.1 429 78.3
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 5.3e-190 667.9 428 77.3
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 6.9e-190 667.5 448 76.6
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.9e-190 667.5 435 77.5
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 9.0e-190 667.2 428 77.6
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 77.6
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 77.6
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.5e-189 666.4 428 77.6
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 4.4e-189 664.8 429 76.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 77.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 7.6e-189 664.1 428 77.3
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.7e-188 662.9 428 77.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.7e-188 662.9 467 74.9
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.2e-188 662.5 429 76.7
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.9e-188 662.1 433 77.1
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 3.8e-188 661.8 428 76.4
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 3.8e-188 661.8 437 76.4
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.8e-188 661.8 429 77.2
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 4.9e-188 661.4 429 76.7
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.1e-187 660.2 428 76.6
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.1e-187 660.2 431 77.0
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.1e-187 660.2 428 76.4
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.4e-187 659.1 428 79.9
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.2e-187 658.3 429 77.4
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.2e-187 658.3 429 76.0
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 5.4e-187 657.9 441 75.5
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.1e-187 657.5 429 77.2
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.2e-186 656.8 430 78.4
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.7e-186 655.6 433 76.0
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.5e-186 655.2 489 70.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.8e-186 654.1 428 75.2
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.0e-185 652.1 430 76.5
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 3.9e-185 651.7 433 75.5
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.9e-185 651.7 389 82.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 6.6e-185 651.0 428 77.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 6.6e-185 651.0 433 76.2
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 8.7e-185 650.6 430 76.7
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.7e-185 650.6 431 77.0
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.9e-184 649.4 430 75.8
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.5e-184 649.0 403 79.2
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 4.3e-184 648.3 428 76.4
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.3e-184 647.5 442 74.2
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 9.6e-184 647.1 429 76.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 9.6e-184 647.1 430 74.4
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 9.6e-184 647.1 430 76.5
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.3e-183 646.7 442 74.2
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.1e-183 646.0 435 75.9
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 6.2e-183 644.4 428 76.9
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 6.2e-183 644.4 428 76.6
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.1e-182 643.7 449 73.9
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.8e-182 642.9 431 74.0
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.8e-182 642.9 430 74.7
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 1.8e-182 642.9 430 76.3
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.5e-181 639.8 430 74.7
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 2.6e-181 639.0 432 76.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 9.9e-181 637.1 430 74.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.2e-180 636.0 430 74.9
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.9e-180 635.6 438 74.7
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.9e-180 635.6 429 74.8
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 6.4e-180 634.4 430 74.0
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 8.4e-180 634.0 429 74.6
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 3.2e-179 632.1 433 74.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 1.2e-178 630.2 432 74.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.6e-178 629.8 430 73.5
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.6e-178 628.2 459 72.1
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.5e-176 622.5 439 72.2
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.2e-175 617.8 430 73.3
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 8.1e-175 617.5 544 61.9
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 4.0e-174 615.1 506 65.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 3.4e-173 612.1 428 72.0
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 2.2e-172 609.4 430 72.8
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 8.4e-172 607.4 428 72.7
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.9e-171 606.3 429 72.0
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.2e-171 605.5 430 72.1
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.3e-168 595.5 390 75.4
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 5.6e-168 594.7 397 75.8
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 2.1e-167 592.8 406 74.4
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.8e-167 591.7 413 71.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 6.2e-167 591.3 385 74.8
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 4.0e-166 588.6 362 81.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 9.0e-166 587.4 379 76.5
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 8.4e-164 580.9 386 73.1
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 9.3e-163 577.4 342 81.3
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.3e-161 573.5 337 85.5
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.3e-161 573.5 428 68.0
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.1e-160 570.5 362 77.6
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 8.2e-151 537.7 389 69.2
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.0e-148 530.8 344 77.3
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 7.2e-147 524.6 335 76.7
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 9.4e-147 524.2 330 78.5
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 5.1e-145 518.5 370 69.7
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.3e-144 515.8 430 64.0
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.3e-143 513.8 371 70.6
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.4e-142 510.4 337 76.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.5e-139 500.4 393 67.4
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 5.5e-139 498.4 426 61.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 3.0e-137 492.7 346 72.8
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.8e-126 456.8 261 83.9
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.7e-122 443.0 329 67.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 5.5e-115 418.7 257 80.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.2e-114 417.5 293 71.7
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 5.9e-109 398.7 378 57.7
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.1e-102 377.9 230 82.6
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-95 353.6 243 72.8
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 8.9e-89 331.6 232 72.8
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.1e-81 308.1 182 82.4
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 5.2e-81 305.8 367 46.3
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.9e-80 301.6 355 49.0
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.9e-79 299.3 181 79.6
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.5e-67 260.4 154 80.5
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.4e-64 250.0 221 65.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-59 234.2 186 62.4
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-59 234.2 186 62.4
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.6e-59 231.9 244 57.8
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 6.2e-58 229.2 146 75.3
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 6.7e-44 182.6 157 64.3
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 2.2e-42 177.6 101 85.1
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.0e-40 171.0 297 43.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.3e-31 141.7 220 46.4
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 2.3e-28 131.0 82 82.9
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 7.2e-22 109.4 89 65.2
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 6.1e-21 106.3 60 86.7
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 8.8e-20 102.4 79 69.6
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 84.1
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 8.8e-20 102.4 63 84.1
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.7e-19 99.0 90 56.7
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.7e-15 88.2 48 83.3
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 8.5e-15 85.9 50 80.0
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 3.6e-13 80.5 46 80.4
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 2.4e-09 67.8 74 50.0
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 9.1e-09 65.9 74 50.0
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 2.7e-08 64.3 74 50.0
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 7.7e-08 62.8 43 69.8
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.5e-06 58.5 28 89.3
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.9e-06 58.2 38 68.4
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 2.5e-06 57.8 45 60.0


User provided reference genes

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