Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.2e-98 360.9 166 100.0
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.0e-77 293.5 171 80.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.1e-71 273.5 135 88.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.1e-66 256.9 133 82.7
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.3e-64 250.0 134 79.9
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.9e-63 246.1 135 77.0
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 4.1e-63 245.0 135 77.8
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 9.2e-63 243.8 133 76.7
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 9.2e-63 243.8 134 77.6
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-62 243.0 135 76.3
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.6e-62 243.0 135 76.3
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.1e-62 242.7 135 75.6
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 2.1e-62 242.7 137 74.5
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-62 241.9 135 75.6
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-61 240.4 135 75.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.0e-61 240.4 134 76.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.7e-61 239.6 135 74.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.7e-61 239.6 136 74.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.0e-61 238.8 134 73.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.0e-61 238.8 134 75.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.0e-61 238.8 134 75.4
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.1e-61 238.0 134 73.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 6.6e-61 237.7 134 76.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.5e-60 236.5 134 74.6
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.5e-60 236.5 135 73.3
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.5e-60 235.7 136 74.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.3e-60 235.3 134 75.4
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 3.3e-60 235.3 135 71.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 7.3e-60 234.2 135 73.3
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 9.6e-60 233.8 132 72.7
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 9.6e-60 233.8 136 69.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.2e-59 233.4 135 71.9
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.2e-59 233.4 135 72.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.6e-59 233.0 135 71.9
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-59 233.0 136 73.5
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-59 233.0 135 73.3
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-59 232.6 136 73.5
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.8e-59 232.3 135 72.6
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 2.8e-59 232.3 134 70.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-59 232.3 136 72.1
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.8e-59 232.3 136 72.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.6e-59 231.9 136 68.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 3.6e-59 231.9 136 72.8
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 6.2e-59 231.1 134 72.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 8.1e-59 230.7 134 73.9
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.1e-58 230.3 135 71.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.4e-58 229.9 135 70.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.4e-58 229.9 138 68.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.8e-58 229.6 134 70.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.8e-58 229.6 137 71.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 2.4e-58 229.2 134 73.1
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.1e-58 228.8 134 72.4
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.0e-58 228.4 136 72.8
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.2e-58 228.0 134 71.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 6.8e-58 227.6 135 71.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 8.9e-58 227.3 134 73.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 8.9e-58 227.3 135 70.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.2e-57 226.9 135 68.1
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-57 226.9 129 73.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.5e-57 226.5 133 70.7
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.6e-57 225.7 127 74.8
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.6e-57 225.7 134 70.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.4e-57 225.3 135 68.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.4e-57 225.3 129 71.3
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 3.4e-57 225.3 135 70.4
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 7.6e-57 224.2 128 74.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 9.9e-57 223.8 136 67.6
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 9.9e-57 223.8 142 69.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.7e-56 223.0 134 67.2
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-56 222.6 136 70.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.2e-56 222.6 138 66.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.2e-56 222.6 134 71.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 6.4e-56 221.1 135 68.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.4e-56 220.7 136 66.2
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 8.4e-56 220.7 136 70.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.1e-55 220.3 135 67.4
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.9e-55 219.5 127 70.9
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.4e-55 219.2 136 67.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.1e-55 217.6 132 71.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 7.1e-55 217.6 131 71.0
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 9.3e-55 217.2 130 68.5
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.2e-54 216.9 135 68.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.6e-54 216.5 134 69.4
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.6e-54 216.5 134 67.2
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.6e-54 216.5 135 65.2
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.1e-54 216.1 134 67.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-54 216.1 121 72.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.7e-54 215.7 134 68.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 4.6e-54 214.9 133 64.7
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 6.0e-54 214.5 134 67.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 6.0e-54 214.5 134 67.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 7.8e-54 214.2 121 75.2
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.0e-53 213.8 136 64.7
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.3e-53 213.4 135 66.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.3e-53 213.4 126 69.0
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.3e-53 213.4 134 67.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.3e-53 212.6 136 65.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.9e-53 211.8 134 67.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.9e-53 211.8 131 66.4
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.9e-53 211.8 118 72.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 5.1e-53 211.5 133 67.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 8.7e-53 210.7 134 66.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.7e-53 210.7 131 65.6
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.7e-53 210.7 131 67.2
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.9e-52 209.5 133 66.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.9e-52 209.5 128 68.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 3.3e-52 208.8 134 64.2
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.3e-52 207.6 121 71.1
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 9.6e-52 207.2 135 63.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.3e-51 206.8 133 65.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 2.1e-51 206.1 133 66.2
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.1e-51 206.1 117 69.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.8e-51 205.7 120 73.3
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.6e-51 205.3 134 65.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.8e-51 204.9 128 68.8
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 6.2e-51 204.5 129 67.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 8.1e-51 204.1 123 68.3
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.4e-50 203.4 113 72.6
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.8e-50 203.0 173 55.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 9.0e-50 200.7 134 64.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 2.9e-48 195.7 121 68.6
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.9e-48 195.7 134 64.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.1e-47 193.7 129 63.6
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.1e-46 189.5 130 63.1
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 6.0e-46 188.0 126 61.9
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.0e-45 187.2 129 62.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.0e-45 185.7 112 72.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-44 183.7 136 55.9
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.5e-44 183.3 131 58.8
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.3e-44 182.2 129 61.2
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.3e-44 181.0 134 60.4
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.3e-44 181.0 130 61.5
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.3e-42 174.9 130 59.2
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.2e-41 173.7 101 71.3
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 2.6e-41 172.6 136 60.3
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.0e-38 161.4 119 61.3
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 7.9e-38 161.0 96 69.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.3e-37 159.5 125 57.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.7e-37 157.9 130 56.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 8.1e-35 151.0 96 68.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-33 146.4 97 66.0
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.1e-31 140.6 141 45.4
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-31 140.2 85 69.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.8e-29 133.3 74 75.7
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-25 120.2 71 71.8
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-24 117.1 73 71.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-24 116.7 112 49.1
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-20 102.8 80 51.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-19 100.5 63 66.7
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.0e-17 93.2 79 51.9


User provided reference genes

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