Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.3e-108 396.4 191 100.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.6e-106 389.4 191 97.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 5.0e-97 357.8 191 91.6
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 5.4e-91 337.8 192 88.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 2.0e-61 239.6 197 63.5
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.6e-61 237.7 204 64.7
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.9e-60 235.0 197 62.4
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 4.9e-60 235.0 216 59.7
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.2e-59 232.3 197 61.9
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.5e-59 231.5 197 61.9
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 7.1e-59 231.1 207 58.5
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 7.1e-59 231.1 206 63.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 6.0e-58 228.0 209 62.2
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.8e-57 226.5 191 61.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-56 223.8 211 58.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.5e-56 222.6 211 58.3
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.6e-56 221.5 201 57.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 7.4e-56 221.1 202 59.4
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.7e-55 218.8 213 57.7
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 6.9e-54 214.5 220 58.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.0e-53 213.0 209 58.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 4.5e-53 211.8 201 57.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.0e-52 210.7 203 57.1
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-52 210.7 190 57.4
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 2.2e-52 209.5 178 59.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.8e-52 208.8 211 57.8
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.4e-51 206.8 231 51.5
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-51 206.1 202 59.9
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.5e-51 206.1 202 59.9
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 6.0e-50 201.4 172 61.0
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.9e-50 201.1 202 58.4
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.9e-50 201.1 202 55.0
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-49 200.7 213 54.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.0e-49 199.1 213 54.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.1e-49 198.4 207 54.1
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-48 196.8 213 53.5
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.3e-48 195.3 216 51.9
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.4e-48 194.5 197 54.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 9.6e-48 194.1 210 50.5
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.1e-47 193.0 230 49.6
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.1e-46 190.7 205 51.7
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.1e-46 188.7 207 53.1
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 5.3e-46 188.3 197 53.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 6.9e-46 188.0 197 53.3
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.2e-45 187.2 203 54.7
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.2e-45 187.2 191 58.1
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 3.4e-45 185.7 193 52.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.6e-45 184.5 203 53.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.6e-45 184.5 203 54.2
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.0e-44 184.1 242 49.6
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.4e-43 180.3 204 49.0
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.9e-43 179.9 209 53.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 4.2e-43 178.7 191 49.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 3.6e-42 175.6 225 46.2
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.0e-41 174.1 217 48.8
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.3e-41 173.7 208 48.6
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 6.7e-41 171.4 205 52.7
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-40 170.6 225 48.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.5e-40 170.2 207 49.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-40 170.2 204 47.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.9e-40 169.9 209 51.7
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.3e-40 169.1 224 48.2
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.3e-40 169.1 183 51.9
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.6e-39 166.8 142 60.6
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.8e-39 165.2 201 49.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.3e-39 164.9 210 51.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.1e-38 162.2 193 47.7
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.3e-38 161.8 203 46.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-37 159.8 185 47.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.5e-37 158.7 193 46.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 7.7e-37 157.9 209 47.4
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.3e-36 157.1 199 45.7
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-36 156.8 203 45.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-36 156.8 203 45.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.7e-36 156.8 203 45.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.9e-36 156.0 204 47.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.8e-36 155.6 221 45.7
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.5e-36 154.8 196 46.9
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 8.5e-36 154.5 201 48.3
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 8.5e-36 154.5 201 48.3
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 8.5e-36 154.5 219 46.6
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 8.5e-36 154.5 185 47.6
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.1e-35 154.1 210 44.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.4e-35 153.7 205 46.8
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.9e-35 153.3 199 46.2
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.9e-35 153.3 181 48.6
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.5e-35 152.9 205 46.8
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.2e-35 152.5 203 45.3
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.2e-35 152.5 206 45.6
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.2e-35 152.5 203 45.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 4.2e-35 152.1 206 45.1
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.2e-35 152.1 172 50.6
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.2e-35 152.1 209 46.4
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 5.5e-35 151.8 201 45.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.5e-35 151.8 205 45.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 5.5e-35 151.8 201 45.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 5.5e-35 151.8 201 45.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.5e-35 151.8 205 45.4
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 7.2e-35 151.4 203 45.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 7.2e-35 151.4 190 47.9
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.2e-35 151.4 172 50.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.4e-35 151.0 177 47.5
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-34 150.2 206 45.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-34 150.2 206 45.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-34 150.2 206 45.1
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.6e-34 150.2 206 44.2
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 4.6e-34 148.7 206 44.7
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 6.1e-34 148.3 202 43.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 6.1e-34 148.3 194 44.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.0e-33 147.5 166 50.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.0e-33 147.5 192 43.8
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.8e-33 146.7 208 47.6
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.3e-33 146.4 209 44.5
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.0e-33 146.0 195 46.2
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 5.1e-33 145.2 208 44.2
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.3e-32 142.5 229 44.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 4.4e-32 142.1 191 47.6
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.4e-32 141.4 200 44.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 9.7e-32 141.0 202 45.0
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.3e-31 140.6 174 47.7
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.8e-31 139.4 200 46.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 4.8e-31 138.7 213 44.1
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 8.2e-31 137.9 191 45.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.8e-30 136.7 226 42.0
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 5.3e-30 135.2 169 46.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-29 134.0 223 41.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 5.9e-29 131.7 220 41.4
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.9e-28 129.4 186 42.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.8e-28 129.0 185 41.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.5e-27 126.3 175 43.4
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.2e-27 125.9 166 44.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.9e-25 119.0 260 36.9
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-24 117.1 182 39.0
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.0e-24 116.7 178 39.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.6e-24 116.3 247 37.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.3e-23 111.7 183 39.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.4e-22 109.8 192 40.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-22 108.6 122 51.6
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.2e-21 107.5 190 37.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-21 106.7 198 35.4
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.5e-21 105.5 172 37.8
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.5e-21 105.5 147 44.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 5.9e-21 105.1 101 55.4
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.0e-20 104.4 120 50.8
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.7e-20 103.6 175 40.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.9e-20 102.8 96 55.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.1e-19 100.9 219 34.2
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.5e-19 98.6 198 38.4
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.7e-18 96.3 190 37.9
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.0e-18 94.7 197 34.0
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.0e-17 94.4 205 33.7
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.8e-17 93.6 160 41.2
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 3.0e-17 92.8 103 48.5
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 6.7e-17 91.7 179 38.5
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 6.7e-17 91.7 179 38.5
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 8.8e-17 91.3 179 38.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-16 90.9 198 36.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.2e-16 90.9 198 36.9
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.2e-15 86.7 197 35.0
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.2e-15 86.7 178 34.8
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 9.1e-14 81.3 131 44.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.6e-13 80.5 81 56.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.0e-13 80.1 163 33.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.0e-12 77.8 192 31.2
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.7e-12 77.0 169 36.1
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 5.5e-11 72.0 158 32.9
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 3.6e-10 69.3 239 28.5
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.3e-09 66.6 93 41.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.0e-09 66.2 169 33.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.8e-09 64.7 154 31.2
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.4e-08 62.8 80 46.2
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 4.1e-06 55.8 75 45.3


User provided reference genes

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