Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 3.0e-114 415.2 216 100.0
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.0e-98 363.6 228 85.1
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 1.2e-94 350.1 252 76.2
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 4.8e-88 328.2 213 80.3
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 7.3e-68 261.2 210 69.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 1.0e-66 257.3 216 64.8
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 1.4e-66 256.9 211 66.8
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 4.0e-66 255.4 208 67.3
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 5.2e-66 255.0 208 67.3
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.4e-65 252.3 209 65.6
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 7.5e-65 251.1 210 63.3
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 7.5e-65 251.1 210 62.4
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.3e-64 250.4 208 66.3
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.4e-63 246.1 214 63.6
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.4e-63 246.1 209 63.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.4e-63 246.1 209 63.6
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 4.1e-63 245.4 207 61.8
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 9.2e-63 244.2 220 60.0
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 2.0e-62 243.0 209 64.1
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 2.7e-62 242.7 228 59.6
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 3.5e-62 242.3 220 59.1
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 4.6e-62 241.9 211 64.0
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 7.8e-62 241.1 217 62.2
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-61 240.7 220 58.6
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 1.3e-61 240.4 208 62.5
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 1.7e-61 240.0 219 59.4
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 2.3e-61 239.6 208 62.5
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 3.0e-61 239.2 227 60.8
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 5.0e-61 238.4 209 60.3
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 2.5e-60 236.1 213 62.0
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 4.3e-60 235.3 220 58.2
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 7.3e-60 234.6 212 60.4
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 7.3e-60 234.6 212 59.4
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 7.3e-60 234.6 213 60.1
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 9.5e-60 234.2 213 57.7
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.6e-59 233.4 209 61.7
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.1e-59 233.0 213 59.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 6.2e-59 231.5 216 58.8
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 5.2e-58 228.4 209 60.8
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 5.2e-58 228.4 162 71.6
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 6.8e-58 228.0 216 61.6
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 8.9e-58 227.6 208 59.6
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.3e-56 223.8 208 57.7
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.2e-56 223.0 211 58.3
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.9e-56 222.6 220 57.3
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 2.9e-56 222.6 208 57.2
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 4.9e-56 221.9 221 56.6
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 3.2e-55 219.2 222 55.0
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 7.1e-55 218.0 139 74.1
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 9.2e-55 217.6 217 55.8
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.6e-54 216.9 210 57.1
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 2.7e-54 216.1 208 56.7
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 7.8e-54 214.5 183 62.3
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 7.8e-54 214.5 231 55.0
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.3e-53 213.8 212 55.2
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.7e-53 213.4 208 55.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.1e-52 210.7 200 58.5
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.9e-52 209.9 212 55.7
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 3.3e-52 209.1 208 56.2
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.3e-52 208.8 212 55.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 5.6e-52 208.4 232 52.2
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 7.3e-52 208.0 211 56.4
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 1.2e-51 207.2 214 54.7
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 1.2e-51 207.2 207 54.6
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 1.6e-51 206.8 238 51.3
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 2.1e-51 206.5 219 54.3
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 3.6e-51 205.7 210 53.8
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 4.7e-51 205.3 212 58.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.7e-51 205.3 217 54.4
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 8.1e-51 204.5 228 49.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.4e-50 203.8 280 47.5
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.3e-50 203.0 220 53.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 4.0e-50 202.2 215 53.0
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 5.2e-50 201.8 140 66.4
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.2e-49 200.7 211 54.0
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 5.8e-49 198.4 253 47.4
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 5.8e-49 198.4 210 52.9
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 2.9e-48 196.1 218 51.4
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.4e-47 193.7 208 51.0
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.4e-47 193.7 208 51.0
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 5.4e-47 191.8 208 51.9
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 7.1e-47 191.4 208 51.9
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 9.2e-47 191.0 234 50.4
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.2e-46 190.7 210 52.4
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.2e-46 190.7 199 55.8
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.2e-46 190.7 208 51.9
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.5e-44 183.0 125 71.2
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.2e-43 180.6 209 49.8
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 6.2e-43 178.3 212 49.1
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 2.4e-42 176.4 208 50.5
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 4.9e-40 168.7 215 47.9
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.7e-37 160.2 109 68.8
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.9e-36 156.8 230 43.5
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 2.4e-34 149.8 210 46.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 2.2e-32 143.3 120 65.0
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.0e-29 134.4 151 55.0
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 4.3e-28 129.0 79 74.7
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.8e-26 123.6 141 53.2
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 6.9e-26 121.7 219 42.0
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 6.4e-24 115.2 131 53.4
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.4e-24 114.8 142 50.0
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 4.2e-23 112.5 70 72.9
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 9.3e-23 111.3 152 43.4
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.1e-20 104.4 208 37.0
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 5.8e-17 92.0 97 52.6
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.1e-15 87.8 78 51.3
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 7.1e-15 85.1 78 51.3
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 6.0e-14 82.0 53 73.6
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.4e-10 70.9 47 66.0
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 1.0e-08 64.7 103 31.1
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 1.7e-08 63.9 101 31.7
Lsat_1_v5_gn_6_112921 Lactuca sativa HOM05D005920 ORTHO05D007211 9.3e-07 58.2 140 26.4
C04p03740 Brassica napus HOM05D000868 ORTHO05D000711 3.6e-06 56.2 100 36.0
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 6.1e-06 55.5 62 43.5
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 6.1e-06 55.5 129 27.9
Cfa025863 Carpinus fangiana HOM05D002462 ORTHO05D002893 7.9e-06 55.1 117 24.8
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 7.9e-06 55.1 150 28.0
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.9e-06 55.1 105 37.1
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 7.9e-06 55.1 129 28.7


User provided reference genes

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