Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 9.6e-150 533.5 273 100.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.6e-133 479.6 273 90.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.1e-132 475.3 273 89.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 3.5e-128 461.8 240 97.5
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.8e-122 441.8 273 85.3
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 5.0e-122 441.4 273 82.4
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 4.6e-120 434.9 273 81.0
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 3.9e-119 431.8 274 80.7
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.7e-117 426.4 280 78.6
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.2e-117 426.0 274 79.2
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.7e-117 425.2 274 79.6
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.4e-116 423.3 281 78.3
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.4e-116 423.3 282 78.4
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.1e-116 422.2 277 80.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 5.3e-116 421.4 269 79.2
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.5e-115 419.9 277 79.4
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.4e-115 418.7 281 77.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.9e-115 417.9 269 78.4
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.9e-114 415.6 259 80.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.8e-114 415.2 269 78.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 6.5e-114 414.5 268 80.6
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 8.5e-114 414.1 271 76.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.1e-113 413.7 273 77.7
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.5e-113 412.5 255 82.4
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.2e-113 411.8 271 77.5
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.2e-113 411.0 269 78.1
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 9.4e-113 410.6 246 82.9
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.6e-112 409.8 278 76.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.7e-112 409.1 275 77.8
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 3.6e-112 408.7 275 76.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.6e-112 408.7 272 77.6
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.7e-112 408.3 270 79.6
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 7.9e-112 407.5 260 80.8
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 3.9e-111 405.2 271 78.2
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.9e-111 405.2 283 74.6
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.1e-111 404.8 265 77.4
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.1e-111 404.8 275 77.1
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 6.7e-111 404.4 271 76.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 8.8e-111 404.1 272 76.5
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.1e-110 403.7 275 76.0
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.5e-110 403.3 245 80.8
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.5e-110 403.3 267 75.7
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.5e-110 403.3 279 76.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 7.4e-110 401.0 271 74.9
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 9.7e-110 400.6 271 75.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 9.7e-110 400.6 288 75.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.3e-109 400.2 267 77.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.7e-109 399.8 259 77.6
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.7e-109 398.7 268 75.7
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 6.3e-109 397.9 268 75.7
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.2e-109 397.5 292 70.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-108 397.1 250 82.0
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.4e-108 396.7 271 74.5
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.8e-108 396.4 266 75.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.8e-108 396.4 271 73.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 3.1e-108 395.6 271 73.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.1e-108 395.2 282 73.8
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 9.1e-108 394.0 298 68.8
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 3.5e-107 392.1 266 74.8
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 3.5e-107 392.1 273 73.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.7e-107 391.0 269 75.5
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 2.2e-106 389.4 266 74.4
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.2e-106 389.4 273 72.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.8e-106 388.7 293 69.6
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.8e-106 388.7 255 78.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.2e-104 383.6 271 73.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 2.7e-104 382.5 273 73.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.6e-104 382.1 280 71.4
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 8.0e-104 380.9 277 72.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.0e-104 380.9 261 73.9
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.3e-103 379.4 282 70.6
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 5.2e-103 378.3 271 72.7
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.3e-102 375.6 223 83.9
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.3e-102 375.6 267 73.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 4.4e-102 375.2 290 69.0
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 5.7e-102 374.8 287 69.3
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.3e-101 373.6 273 71.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.7e-98 363.2 294 68.0
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 5.0e-98 361.7 281 68.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 7.2e-97 357.8 260 70.4
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 7.2e-97 357.8 245 76.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 6.1e-96 354.8 223 80.7
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 8.0e-96 354.4 241 75.5
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.0e-95 352.4 294 65.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.0e-95 352.4 275 69.1
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 3.3e-94 349.0 249 71.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.3e-94 349.0 238 74.8
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.7e-93 346.7 272 67.6
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 6.3e-93 344.7 244 72.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.7e-91 339.3 266 69.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.0e-87 327.4 223 74.0
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.0e-87 325.5 198 84.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 5.2e-87 325.1 223 75.3
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.4e-86 322.4 280 62.9
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 4.8e-85 318.5 338 54.7
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 5.4e-84 315.1 196 79.6
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.0e-82 310.8 268 63.4
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-82 310.1 273 61.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 8.0e-80 301.2 172 85.5
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.5e-78 297.0 197 74.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.7e-77 293.5 196 75.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.8e-77 292.7 345 50.7
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.1e-76 290.8 233 66.1
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-75 285.8 208 72.6
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.7e-72 275.4 176 79.5
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.8e-71 273.5 266 55.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 8.3e-61 238.0 225 58.7
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.4e-60 236.5 242 50.0
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 4.1e-60 235.7 241 50.2
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-58 230.3 343 43.7
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.5e-57 227.3 199 61.8
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.1e-56 223.4 234 48.7
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-47 194.1 167 58.1
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 5.4e-44 182.2 251 46.6
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.8e-43 178.3 119 76.5
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-36 157.9 123 72.4
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.1e-34 149.1 91 79.1
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-33 147.9 123 68.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.1e-32 143.7 96 78.1
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 4.5e-30 136.0 123 63.4
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.5e-25 120.9 123 54.5
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.6e-24 117.5 284 33.8
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 5.3e-23 112.5 73 82.2
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-23 111.7 92 56.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.0e-22 110.5 169 41.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.9e-21 106.7 78 67.9
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-19 99.4 79 67.1
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.5e-17 94.4 59 78.0
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-17 93.6 88 61.4
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 7.4e-17 92.0 57 75.4
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.1e-16 90.5 51 82.4
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 8.2e-16 88.6 200 38.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.8e-15 87.4 200 37.0
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.2e-14 84.7 102 50.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-14 83.6 55 70.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-14 83.6 55 70.9
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 3.4e-14 83.2 110 45.5
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.3e-13 81.3 50 76.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 2.9e-13 80.1 231 28.6
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 2.9e-13 80.1 89 52.8
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.5e-11 73.2 59 55.9
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.0e-10 71.6 93 48.4
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.1e-10 69.3 55 65.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.6e-08 64.3 40 77.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 4.8e-08 62.8 208 23.1
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.4e-07 61.2 225 24.9
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.1e-07 60.1 208 22.6
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.5e-06 57.8 227 22.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 3.4e-06 56.6 250 22.0
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 4.5e-06 56.2 208 21.6
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 5.9e-06 55.8 228 23.7


User provided reference genes

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