Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.1e-176 623.2 339 100.0
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.8e-167 591.3 340 95.6
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 7.7e-157 557.4 341 91.8
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 2.6e-120 436.0 353 75.4
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 3.7e-50 203.0 348 44.3
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.7e-45 186.8 349 43.3
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 4.7e-45 186.0 349 43.3
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.0e-45 185.3 349 42.7
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.7e-42 177.6 332 41.0
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.1e-41 174.9 349 40.7
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.3e-41 172.6 350 41.7
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.5e-40 169.9 338 39.9
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 7.7e-40 168.7 338 40.5
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.0e-39 168.3 335 41.2
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.7e-39 167.5 351 41.3
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.2e-39 167.2 364 39.6
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 2.9e-39 166.8 354 39.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 3.8e-39 166.4 329 41.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.5e-39 165.2 341 41.1
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 9.4e-38 161.8 352 39.5
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.6e-37 161.0 338 40.2
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 3.6e-37 159.8 346 39.0
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.6e-37 159.8 288 42.7
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 6.1e-37 159.1 327 39.4
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 8.0e-37 158.7 330 40.3
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.8e-36 157.5 346 39.3
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.8e-36 157.5 341 38.4
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.8e-36 157.5 357 39.8
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.8e-36 157.5 356 38.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 1.8e-36 157.5 350 37.4
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.3e-36 157.1 328 41.8
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 3.0e-36 156.8 366 37.2
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.7e-36 155.6 330 38.2
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.7e-36 155.6 330 38.2
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.5e-35 154.5 352 37.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.0e-35 154.1 326 39.3
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.5e-35 152.1 346 40.2
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 2.2e-34 150.6 341 36.7
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.2e-34 150.6 332 40.1
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.4e-33 147.9 339 38.3
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.4e-33 147.9 348 38.2
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.4e-33 147.1 348 34.5
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.3e-33 146.0 329 38.9
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.3e-33 146.0 363 35.0
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.6e-32 144.4 344 36.9
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 2.7e-32 143.7 338 38.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.5e-32 142.9 328 37.2
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 4.5e-32 142.9 328 37.2
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 1.7e-31 141.0 347 36.6
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 2.2e-31 140.6 343 40.2
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.9e-31 140.2 294 41.8
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 3.8e-31 139.8 329 38.6
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 6.5e-31 139.0 339 38.9
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.5e-30 137.9 371 36.7
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-30 137.9 329 37.1
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 4.2e-30 136.3 364 35.2
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 4.2e-30 136.3 324 36.4
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 9.4e-30 135.2 317 36.9
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.1e-29 134.0 348 35.9
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 2.7e-29 133.7 357 36.1
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 4.7e-29 132.9 340 34.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.7e-29 132.9 339 36.6
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 4.7e-29 132.9 334 37.7
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 6.8e-28 129.0 322 36.0
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.8e-28 128.6 200 47.5
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.5e-27 127.9 342 37.1
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.7e-27 125.9 345 33.6
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.2e-26 124.0 360 34.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.2e-26 124.0 339 37.8
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.8e-26 122.9 342 35.1
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.3e-26 122.1 341 33.7
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.1e-25 121.7 342 33.9
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 2.4e-25 120.6 332 36.4
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 2.4e-25 120.6 332 36.4
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 3.1e-25 120.2 327 34.3
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 4.1e-25 119.8 303 34.7
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 5.4e-25 119.4 340 33.2
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.4e-25 119.4 340 33.2
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 5.4e-25 119.4 342 37.1
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 7.0e-25 119.0 334 34.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.2e-24 118.2 334 35.3
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.6e-24 117.9 343 34.1
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.9e-24 115.9 342 33.6
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.0e-23 115.2 380 33.4
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.0e-23 115.2 346 35.8
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 1.3e-23 114.8 339 36.3
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.7e-23 114.4 348 34.2
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.7e-23 114.4 348 34.2
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.7e-23 114.4 348 34.2
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.3e-23 114.0 340 34.4
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 5.0e-23 112.8 348 31.9
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 6.6e-23 112.5 347 30.3
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 8.6e-23 112.1 344 33.7
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.1e-22 111.7 348 30.7
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.1e-22 111.7 348 32.8
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.9e-22 110.9 339 30.7
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.9e-22 110.9 339 30.7
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.5e-22 110.5 347 30.0
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 4.2e-22 109.8 329 35.3
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 7.2e-22 109.0 331 35.3
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 9.5e-22 108.6 346 30.6
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 1.2e-21 108.2 378 32.8
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 1.6e-21 107.8 335 33.4
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.6e-21 107.8 332 35.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.8e-21 107.1 332 34.3
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 3.6e-21 106.7 329 33.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.7e-21 106.3 333 34.2
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.0e-20 105.1 348 35.1
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.4e-20 104.8 252 38.5
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.8e-20 104.4 350 34.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.0e-20 103.6 347 32.0
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 4.0e-20 103.2 350 33.7
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 6.8e-20 102.4 327 29.7
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 6.8e-20 102.4 357 31.1
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.8e-20 102.4 343 31.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-19 101.7 319 36.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.0e-19 100.9 347 33.1
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 2.0e-19 100.9 347 30.5
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.4e-19 100.1 348 29.9
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 4.4e-19 99.8 350 33.4
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.4e-19 99.8 331 35.6
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.7e-19 99.4 339 33.3
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 9.8e-19 98.6 350 28.9
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.3e-18 98.2 203 40.9
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.8e-18 97.1 325 33.2
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.1e-17 95.1 362 30.4
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 2.4e-17 94.0 216 38.0
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 3.2e-17 93.6 344 32.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 7.0e-17 92.4 335 29.0
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.7e-15 87.8 278 31.7
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 2.9e-15 87.0 324 33.3
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.9e-15 87.0 331 31.1
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 5.0e-15 86.3 332 30.4
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.9e-14 84.3 320 30.0
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 7.3e-14 82.4 401 33.2
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.1e-13 80.9 312 30.8
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 6.1e-13 79.3 319 32.9
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 8.0e-13 79.0 337 28.2
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.3e-12 77.4 268 31.3
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 2.3e-12 77.4 268 31.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.8e-12 75.9 354 33.9
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 4.4e-11 73.2 344 32.3
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 4.1e-09 66.6 316 27.5
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 5.4e-09 66.2 330 35.2
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.6e-08 64.7 327 32.1
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 8.6e-07 58.9 318 27.0


User provided reference genes

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