Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 4.2e-161 571.2 279 100.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.5e-129 466.5 227 98.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 3.8e-125 451.8 225 95.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 8.9e-119 430.6 223 90.6
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 2.1e-115 419.5 223 88.8
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 1.3e-114 416.8 221 87.3
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.3e-114 416.0 221 86.4
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.0e-114 415.6 221 86.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 3.0e-114 415.6 221 87.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 8.7e-114 414.1 221 86.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.9e-113 412.9 221 85.1
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.3e-113 412.1 245 79.2
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 5.6e-113 411.4 221 86.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 9.6e-113 410.6 221 86.9
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.8e-112 409.1 221 87.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.8e-112 409.1 221 85.5
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 3.6e-112 408.7 217 86.2
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 3.6e-112 408.7 221 86.9
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.6e-112 408.7 224 84.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 8.1e-112 407.5 221 84.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 8.1e-112 407.5 221 82.8
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 8.1e-112 407.5 221 86.9
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.4e-111 406.8 230 80.0
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.8e-111 406.4 221 84.2
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.4e-111 406.0 221 84.2
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.1e-111 405.6 228 82.5
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 3.1e-111 405.6 224 83.5
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 4.0e-111 405.2 221 84.6
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 5.3e-111 404.8 221 84.6
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 5.3e-111 404.8 221 85.1
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 5.3e-111 404.8 221 84.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 6.9e-111 404.4 222 84.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.2e-110 403.7 251 75.3
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.2e-110 403.7 221 86.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.5e-110 403.3 221 82.8
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.0e-110 402.9 221 84.2
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 2.0e-110 402.9 221 85.5
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.6e-110 402.5 222 84.2
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.5e-110 401.7 221 82.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.5e-110 401.7 221 84.6
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.5e-110 401.7 221 84.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.8e-110 401.4 222 82.9
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 9.9e-110 400.6 221 82.8
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 9.9e-110 400.6 222 84.2
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.3e-109 400.2 220 84.5
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.7e-109 399.8 221 83.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.2e-109 399.4 219 84.9
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.2e-109 399.4 218 84.9
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.9e-109 399.1 221 83.7
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.8e-109 398.7 221 82.4
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.8e-109 398.7 222 82.9
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.9e-109 398.3 222 82.4
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.9e-109 398.3 221 81.9
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 4.9e-109 398.3 221 83.7
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 8.4e-109 397.5 221 84.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 8.4e-109 397.5 221 83.7
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.1e-108 397.1 222 82.4
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.1e-108 397.1 226 81.4
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.4e-108 396.0 221 82.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 3.2e-108 395.6 222 82.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.2e-108 395.6 221 83.3
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 7.1e-108 394.4 221 83.3
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 7.1e-108 394.4 216 83.8
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 7.1e-108 394.4 216 83.8
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 7.1e-108 394.4 216 83.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 7.1e-108 394.4 216 83.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 9.3e-108 394.0 216 83.3
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 9.3e-108 394.0 216 83.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.2e-107 393.7 222 80.6
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.2e-107 393.7 207 87.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.2e-107 393.7 228 79.8
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.6e-107 393.3 225 80.4
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.6e-107 393.3 221 82.8
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-107 392.9 216 83.3
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.7e-107 392.5 216 83.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.7e-107 392.5 216 85.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.5e-107 392.1 221 81.9
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.6e-107 391.7 221 81.0
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.6e-107 391.7 222 81.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 7.9e-107 391.0 207 86.0
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.0e-106 390.6 221 83.3
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.3e-106 390.2 220 80.5
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.3e-106 390.2 221 81.4
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.3e-106 390.2 221 81.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.8e-106 389.8 216 82.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.8e-106 389.8 221 81.4
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.8e-106 389.8 220 81.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.3e-106 389.4 216 82.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 5.1e-106 388.3 216 82.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 6.7e-106 387.9 216 82.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 8.7e-106 387.5 221 80.1
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 8.7e-106 387.5 221 81.9
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-105 386.7 221 81.0
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.9e-105 386.3 234 78.6
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.5e-105 386.0 228 79.8
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.5e-105 386.0 215 83.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 5.6e-105 384.8 221 81.9
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.4e-105 384.4 249 73.9
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 9.6e-105 384.0 216 81.9
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 9.6e-105 384.0 221 81.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-104 383.6 222 79.3
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.6e-104 383.3 218 80.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.1e-104 382.9 216 80.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.8e-104 382.5 216 81.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.8e-104 382.5 216 81.5
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.8e-104 382.5 218 81.2
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.6e-104 382.1 216 81.0
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.6e-104 382.1 221 80.5
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 6.2e-104 381.3 222 79.3
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.8e-103 379.8 221 81.0
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.1e-103 379.0 218 79.4
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.0e-102 376.3 241 74.3
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 5.8e-102 374.8 221 81.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.6e-102 374.4 222 78.4
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.5e-100 368.2 277 65.7
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.2e-99 367.1 222 76.1
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.3e-97 358.6 203 82.3
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.8e-96 355.9 219 71.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.4e-94 349.0 229 72.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.8e-87 326.6 219 67.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 6.9e-87 324.7 226 66.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 7.6e-86 321.2 213 67.6
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.2e-83 313.9 169 85.8
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.3e-82 310.5 218 65.1
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.7e-77 293.5 164 84.1
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.2e-76 288.9 161 83.9
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.4e-71 273.9 165 73.9
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.1e-71 272.7 189 69.8
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 4.5e-70 268.9 215 58.1
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 5.7e-65 251.9 128 85.9
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-61 240.4 161 70.2
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.6e-59 233.8 218 52.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-56 224.2 132 76.5
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.1e-55 221.1 209 52.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 8.5e-53 211.5 209 47.8
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.2e-52 208.4 148 74.3
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 4.7e-51 205.7 111 85.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 6.1e-51 205.3 115 78.3
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.3e-50 203.4 112 78.6
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 8.8e-42 174.9 130 59.2
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 8.3e-40 168.3 112 69.6
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.5e-38 162.9 86 80.2
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.3e-32 144.4 218 35.8
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 5.9e-30 135.6 102 69.6
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.8e-26 124.0 134 45.5
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.5e-25 118.6 75 74.7
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.8e-25 118.2 66 80.3
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.2e-24 117.1 83 62.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.4e-24 115.5 78 76.9
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 8.3e-24 115.2 61 85.2
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.9e-21 106.3 60 68.3
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 4.3e-20 102.8 61 82.0
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.6e-19 100.9 61 83.6
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-18 98.2 64 75.0
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.1e-18 96.7 64 76.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 8.9e-18 95.1 54 75.9
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-17 94.7 65 75.4
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-15 88.2 128 46.1
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 5.4e-15 85.9 100 47.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 7.8e-14 82.0 54 79.6
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.8e-11 73.6 50 70.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.3e-08 64.7 39 69.2
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 2.4e-07 60.5 43 74.4
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 9.2e-07 58.5 35 80.0


User provided reference genes

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