Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.1e-190 667.2 351 100.0
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.5e-166 587.8 333 93.7
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.2e-158 562.0 353 85.8
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.2e-152 543.5 359 81.6
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.7e-151 539.7 359 81.1
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.8e-141 505.8 317 85.2
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.9e-129 466.5 348 71.6
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.2e-128 463.8 348 71.0
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.6e-128 463.4 357 70.3
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-127 459.5 359 70.2
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 8.6e-127 457.6 359 69.4
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.5e-126 456.8 362 68.8
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.5e-126 456.1 360 69.4
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 4.3e-126 455.3 359 69.1
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.6e-126 454.9 335 72.5
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.2e-125 453.8 353 70.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.6e-125 453.4 366 67.5
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-125 453.4 363 68.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.7e-125 451.8 365 68.5
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 4.7e-125 451.8 332 72.9
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 6.2e-125 451.4 360 69.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-124 450.7 344 70.3
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 2.3e-124 449.5 366 67.8
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-124 449.5 389 66.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-123 446.8 361 66.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.6e-123 446.0 348 69.8
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 3.4e-123 445.7 363 68.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.8e-123 444.9 336 70.8
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.7e-122 443.4 354 67.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.9e-122 442.6 359 68.2
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 6.4e-122 441.4 339 69.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 6.4e-122 441.4 359 66.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 8.3e-122 441.0 321 72.6
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.4e-121 440.3 361 67.3
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.4e-121 439.5 363 67.5
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 3.2e-121 439.1 311 74.0
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 5.4e-121 438.3 353 66.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 2.1e-120 436.4 333 69.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.7e-120 436.0 357 67.5
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.5e-120 435.6 335 70.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 6.0e-120 434.9 354 66.9
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 6.0e-120 434.9 364 64.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.0e-119 434.1 363 66.7
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.0e-119 434.1 362 66.3
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.9e-119 432.2 333 67.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.1e-119 431.8 344 67.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.1e-118 430.6 313 72.8
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 5.6e-118 428.3 360 66.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.6e-118 428.3 349 65.3
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.6e-118 428.3 349 65.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.6e-117 426.8 334 67.1
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.6e-117 426.8 362 65.7
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.1e-117 426.4 353 66.3
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.7e-117 425.2 330 69.4
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.7e-117 425.2 330 69.4
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.1e-116 424.1 359 65.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.1e-116 424.1 320 69.7
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.4e-116 423.7 359 64.6
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 1.8e-116 423.3 349 66.5
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.3e-116 422.9 361 64.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.1e-116 422.5 360 63.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 4.0e-116 422.2 356 65.7
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 4.0e-116 422.2 357 65.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 6.8e-116 421.4 348 65.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.8e-116 421.4 352 65.6
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 8.9e-116 421.0 348 65.8
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 8.9e-116 421.0 354 65.3
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 8.9e-116 421.0 357 63.9
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 8.9e-116 421.0 339 67.8
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 8.9e-116 421.0 352 66.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.2e-115 420.6 346 65.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 1.5e-115 420.2 350 65.7
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.5e-115 420.2 339 66.4
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-115 419.9 357 63.9
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-115 419.9 357 65.8
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.6e-115 419.5 359 64.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.6e-115 419.5 330 67.6
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.8e-115 418.3 359 63.8
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.8e-115 418.3 359 63.8
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.8e-115 418.3 359 63.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 7.6e-115 417.9 354 65.0
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-114 416.4 354 64.4
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-114 416.4 354 64.4
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-114 416.4 354 64.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 2.2e-114 416.4 359 63.8
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.9e-114 415.2 355 63.7
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 5.4e-113 411.8 353 63.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.4e-113 411.8 360 62.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 7.1e-113 411.4 336 65.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.7e-112 409.5 343 65.6
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.8e-112 407.9 358 61.7
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.7e-111 406.8 320 68.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-110 404.1 319 67.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.5e-110 403.7 356 62.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.5e-110 403.7 347 64.3
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 7.3e-110 401.4 344 64.2
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.6e-110 401.0 363 62.5
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 4.7e-109 398.7 314 66.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 6.2e-109 398.3 300 68.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 8.1e-109 397.9 310 67.4
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.8e-108 396.7 351 61.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.2e-108 395.2 356 61.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.5e-107 393.7 402 56.5
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.1e-105 387.5 322 62.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 5.4e-105 385.2 329 62.9
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.2e-104 384.0 313 66.1
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.7e-103 380.2 361 61.2
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 3.0e-103 379.4 315 63.2
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.9e-102 376.7 352 58.8
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.6e-102 375.2 350 57.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.3e-101 374.0 308 66.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.1e-101 373.2 314 64.0
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.6e-101 372.5 372 56.5
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.7e-98 363.6 346 57.8
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 6.4e-98 361.7 324 58.3
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 6.4e-98 361.7 329 63.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.6e-96 357.1 323 60.4
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.0e-95 352.8 346 56.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.8e-93 345.5 344 55.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 4.0e-92 342.4 275 67.6
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.4e-89 332.0 244 70.9
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-87 326.6 332 56.9
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 5.1e-87 325.5 262 64.5
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.7e-87 324.7 319 58.3
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.3e-86 322.8 307 59.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.3e-85 320.9 295 60.0
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.1e-84 317.8 263 64.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.5e-83 313.9 316 56.3
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.0e-83 313.5 359 51.3
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.0e-83 313.5 359 51.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 8.7e-79 298.1 320 54.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 5.5e-73 278.9 236 64.0
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.1e-70 271.2 232 64.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.7e-70 268.1 245 60.4
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.6e-67 260.0 238 57.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.5e-65 253.4 249 59.4
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.2e-57 226.5 163 72.4
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.4e-55 221.1 153 75.8
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.3e-53 214.5 214 57.9
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 6.3e-45 185.7 170 59.4
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.9e-34 150.2 104 72.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.0e-34 149.4 104 72.1
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-32 143.3 117 67.5
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.8e-31 141.0 95 73.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.6e-27 127.9 108 60.2
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 5.0e-26 122.9 104 69.2
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.6e-24 116.7 89 68.5
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 8.0e-24 115.5 104 64.4
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 3.0e-23 113.6 72 79.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.5e-22 109.0 116 53.4
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.4e-20 104.8 63 77.8
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.4e-20 104.0 79 73.4
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.7e-18 97.8 92 56.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.9e-18 96.7 78 61.5
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 7.3e-17 92.4 73 69.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.6e-16 90.1 55 70.9
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.2e-16 89.4 102 44.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.5e-14 84.7 270 26.3


User provided reference genes

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