Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 7.6e-189 663.7 337 100.0
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 8.1e-183 643.7 339 96.8
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 5.0e-164 581.3 382 81.9
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.5e-131 473.4 337 71.5
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 8.0e-130 467.6 337 70.6
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 2.3e-129 466.1 333 69.7
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 4.1e-126 455.3 333 68.8
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 1.3e-124 450.3 300 79.0
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.3e-124 450.3 332 67.5
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 1.7e-124 449.9 334 66.8
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 1.1e-123 447.2 336 67.6
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 1.5e-123 446.8 337 67.7
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 2.5e-123 446.0 327 67.3
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.2e-122 443.7 338 69.2
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 1.2e-122 443.7 335 66.3
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 4.7e-122 441.8 335 65.4
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 2.3e-121 439.5 331 66.8
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 3.0e-121 439.1 339 66.7
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 6.8e-121 438.0 335 65.4
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.2e-120 437.2 335 66.9
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 1.5e-120 436.8 334 65.0
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 1.3e-119 433.7 330 64.8
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 2.8e-119 432.6 336 65.5
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 8.3e-119 431.0 339 64.6
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.1e-118 430.6 335 64.8
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 1.1e-118 430.6 341 64.8
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.4e-118 430.3 335 66.3
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.4e-118 430.3 328 65.9
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 2.4e-118 429.5 332 65.1
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 2.4e-118 429.5 338 64.5
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 3.1e-118 429.1 337 63.5
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 5.4e-118 428.3 340 65.3
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 7.0e-118 427.9 335 64.2
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 7.0e-118 427.9 330 67.0
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 9.1e-118 427.6 346 64.7
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 1.6e-117 426.8 345 66.4
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 7.7e-117 424.5 334 65.0
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 1.0e-116 424.1 337 64.4
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 5.0e-116 421.8 337 63.5
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 1.9e-115 419.9 328 64.3
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 2.1e-114 416.4 332 62.3
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.8e-114 416.0 338 65.1
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.8e-114 416.0 336 63.4
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.8e-114 416.0 336 63.4
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 3.6e-114 415.6 335 64.5
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 4.7e-114 415.2 336 63.4
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 6.1e-114 414.8 336 64.3
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.0e-114 414.5 339 63.4
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.8e-113 413.3 333 64.6
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 3.0e-113 412.5 332 63.9
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 4.0e-113 412.1 336 62.8
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 6.8e-113 411.4 333 64.3
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 6.8e-113 411.4 335 64.2
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 8.9e-113 411.0 308 67.2
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 8.9e-113 411.0 311 66.6
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 3.4e-112 409.1 327 66.1
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 3.4e-112 409.1 333 64.9
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 3.4e-112 409.1 333 64.0
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 5.7e-112 408.3 335 62.4
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 7.5e-112 407.9 335 63.9
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.2e-111 406.4 336 64.6
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.2e-111 406.4 336 64.6
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 2.2e-111 406.4 337 60.5
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 6.4e-111 404.8 273 72.5
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.8e-110 403.3 336 64.6
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 7.0e-110 401.4 347 61.7
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 7.0e-110 401.4 335 64.2
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 9.2e-110 401.0 335 64.5
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 2.0e-109 399.8 335 64.5
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 7.8e-109 397.9 356 57.9
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 1.0e-108 397.5 335 64.2
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.0e-108 397.5 337 61.7
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 4.3e-107 392.1 339 60.8
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 5.6e-107 391.7 337 60.2
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 9.5e-107 391.0 376 57.4
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.3e-105 386.3 370 56.2
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 8.9e-105 384.4 337 60.8
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 8.9e-105 384.4 343 58.3
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.4e-104 382.5 336 58.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.4e-104 382.1 261 72.8
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 5.8e-104 381.7 365 55.1
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 9.8e-104 380.9 301 64.1
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 4.9e-103 378.6 315 60.6
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 3.9e-100 369.0 289 64.0
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 5.0e-100 368.6 288 67.4
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.6e-100 367.9 339 58.1
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 9.5e-99 364.4 275 65.1
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 2.4e-94 349.7 339 54.0
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 4.1e-94 349.0 273 64.8
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 7.1e-94 348.2 287 60.3
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 1.6e-93 347.1 286 61.5
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 6.6e-92 341.7 285 62.5
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 3.3e-91 339.3 273 64.5
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.2e-90 337.4 289 61.9
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 3.4e-88 329.3 340 52.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 9.2e-86 321.2 289 63.0
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 7.8e-85 318.2 244 61.9
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 4.0e-81 305.8 273 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 5.1e-76 288.9 289 52.6
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 6.6e-76 288.5 288 52.8
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.3e-74 284.3 262 57.3
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 3.6e-66 256.1 208 66.8
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 5.3e-65 252.3 257 51.0
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 2.9e-63 246.5 270 50.0
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 6.4e-63 245.4 156 78.8
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 7.1e-62 241.9 212 56.6
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 6.9e-57 225.3 223 56.1
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 2.0e-56 223.8 223 55.6
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 5.8e-56 222.2 220 56.8
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 7.1e-54 215.3 194 60.8
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.3e-47 194.5 158 62.0
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.9e-46 190.7 234 47.0
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 1.3e-42 177.9 270 40.4
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.3e-39 167.9 261 37.2
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 4.6e-37 159.5 206 48.1
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 2.6e-19 100.5 88 59.1
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 5.7e-19 99.4 159 38.4
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 2.5e-14 84.0 64 60.9
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 8.8e-12 75.5 56 67.9
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-10 71.2 37 83.8
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 1.1e-06 58.5 70 41.4


User provided reference genes

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