Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.8e-63 245.7 125 100.0
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.4e-33 145.2 103 73.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 4.9e-32 141.4 103 71.8
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.0e-31 137.5 103 69.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 4.3e-28 128.3 94 73.4
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.2e-27 126.7 130 53.8
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 6.1e-27 124.4 109 65.1
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.3e-26 122.5 105 64.8
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.2e-26 121.3 105 61.0
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 5.8e-25 117.9 103 58.3
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 9.8e-25 117.1 105 59.0
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 9.8e-25 117.1 105 59.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-24 116.7 105 58.1
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.7e-24 116.3 105 61.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.2e-24 115.9 105 60.0
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.9e-24 115.5 105 61.0
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.9e-24 115.5 105 58.1
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.9e-24 114.8 103 59.2
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.4e-24 114.4 105 57.1
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 8.3e-24 114.0 104 60.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-23 113.6 105 58.1
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.1e-23 113.6 104 57.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-23 113.2 105 57.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.9e-23 112.8 103 60.2
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.9e-23 112.8 104 57.7
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.9e-23 112.8 105 59.0
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.2e-23 112.1 103 55.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.1e-23 111.7 105 58.1
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 9.2e-23 110.5 101 61.4
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.2e-22 110.2 105 57.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.2e-22 110.2 103 56.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.7e-22 109.0 105 52.4
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.5e-22 108.6 105 56.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 4.6e-22 108.2 105 53.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.0e-22 107.8 126 50.0
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 7.8e-22 107.5 105 52.4
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.3e-21 106.7 117 47.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.7e-21 106.3 105 55.2
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.3e-21 105.9 126 48.4
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.3e-21 105.9 105 55.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.3e-21 105.9 105 54.3
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.3e-21 105.9 105 49.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.9e-21 105.1 117 50.4
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.9e-21 105.1 103 54.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.9e-21 105.1 105 51.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-21 104.8 105 49.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-21 104.8 105 49.5
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-20 103.6 103 53.4
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.9e-20 102.8 105 51.4
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.9e-20 102.8 119 49.6
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.5e-20 102.4 105 50.5
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 3.3e-20 102.1 105 50.5
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.3e-20 102.1 105 52.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 3.3e-20 102.1 103 53.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.3e-20 101.7 105 51.4
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 7.3e-20 100.9 101 51.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.3e-20 100.9 105 49.5
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 7.3e-20 100.9 105 49.5
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 9.5e-20 100.5 103 53.4
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.6e-19 99.8 127 46.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.6e-19 99.8 127 46.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.7e-19 98.2 105 51.4
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.2e-19 97.8 101 52.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-18 97.1 105 51.4
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-18 96.7 105 45.7
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.4e-18 96.7 105 46.7
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.4e-18 96.7 101 52.5
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-18 96.3 103 46.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.8e-18 96.3 105 48.6
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.3e-18 95.9 117 48.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.3e-18 95.9 117 48.7
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.3e-18 95.9 117 48.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.3e-18 95.9 105 46.7
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.1e-18 95.5 103 51.5
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.1e-18 95.5 105 44.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.1e-18 95.5 105 43.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 4.0e-18 95.1 98 49.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.0e-18 95.1 105 46.7
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.0e-18 95.1 111 48.6
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.2e-18 94.7 117 48.7
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.8e-18 94.4 103 50.5
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 6.8e-18 94.4 105 45.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.2e-17 93.6 105 43.8
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.5e-17 93.2 117 47.9
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.5e-17 93.2 105 44.8
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.0e-17 92.8 105 48.6
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 3.4e-17 92.0 101 52.5
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.8e-17 91.3 105 47.6
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 5.8e-17 91.3 105 49.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 5.8e-17 91.3 100 50.0
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.5e-17 90.9 105 49.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.5e-17 90.9 105 47.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 9.8e-17 90.5 105 47.6
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-16 90.1 103 41.7
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.7e-16 89.7 105 43.8
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.2e-16 89.4 104 47.1
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 4.9e-16 88.2 127 41.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 6.4e-16 87.8 113 47.8
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 6.4e-16 87.8 100 51.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.3e-16 87.4 106 47.2
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.3e-16 87.4 106 48.1
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 8.3e-16 87.4 120 41.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.1e-15 87.0 105 49.5
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.4e-15 85.9 97 47.4
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.4e-15 85.9 97 47.4
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.1e-15 85.1 105 46.7
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.1e-14 82.8 97 46.4
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.1e-14 82.8 105 41.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.1e-14 82.8 126 38.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.1e-14 82.8 126 38.9
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.7e-14 82.4 103 42.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.5e-14 82.0 103 40.8
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 4.6e-14 81.6 105 41.0
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 4.6e-14 81.6 105 41.0
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.6e-14 81.6 92 47.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.0e-14 81.3 103 41.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-13 80.1 105 41.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.0e-13 79.0 101 41.6
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.0e-13 79.0 101 41.6
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 6.6e-13 77.8 105 39.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 8.6e-13 77.4 105 40.0
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 8.6e-13 77.4 153 37.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 8.6e-13 77.4 105 40.0
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.5e-12 76.6 117 36.8
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-12 76.3 105 38.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 7.3e-12 74.3 105 38.1
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.1e-11 72.8 99 39.4
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.8e-11 72.4 84 54.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.1e-11 70.9 116 35.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.9e-09 63.9 99 35.4
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.2e-08 62.8 99 34.3
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.2e-07 58.9 84 36.9
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.1e-06 56.2 97 35.1
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.0e-06 54.7 98 33.7
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.0e-06 54.7 84 36.9


User provided reference genes

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