Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G032060 Cucumis sativus L. HOM05D015857 ORTHO05D017858 1.4e-204 716.1 371 100.0
MELO3C011475.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.2e-83 314.3 184 87.5
ClCG08G009950 Citrullus lanatus HOM05D000448 ORTHO05D000291 1.7e-24 117.9 159 45.9
MELO3C011474.2 Cucumis melo HOM05D000448 ORTHO05D000291 9.4e-23 112.1 184 40.8
MELO3C011473.2 Cucumis melo HOM05D021411 ORTHO05D022390 2.1e-22 110.9 172 41.9
CsaV3_6G032070 Cucumis sativus L. HOM05D000448 ORTHO05D000291 2.1e-22 110.9 183 41.0
CsaV3_1G026640 Cucumis sativus L. HOM05D015857 ORTHO05D017858 2.5e-15 87.4 51 80.4
CsaV3_6G032030 Cucumis sativus L. HOM05D021411 ORTHO05D022390 4.2e-15 86.7 157 35.0
Sed0012881 Sechium edule HOM05D015857 ORTHO05D017858 2.3e-13 80.9 105 42.9
Sed0005449 Sechium edule HOM05D015857 ORTHO05D017858 1.5e-12 78.2 77 50.6
MBI14_g39031_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 2.2e-11 74.3 150 37.3
MBI14_g45558_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 2.8e-11 73.9 144 36.1
Manes.05G056701 Manihot esculenta HOM05D000448 ORTHO05D000291 2.8e-11 73.9 119 38.7
Gohir.A12G097900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 3.7e-11 73.6 119 37.0
CiPaw.13G024500 Carya illinoinensis HOM05D000448 ORTHO05D000291 4.8e-11 73.2 118 39.0
Gohir.D12G101200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.8e-11 73.2 116 37.1
Sc23g0005320 Simmondsia chinensis HOM05D000448 ORTHO05D000291 6.3e-11 72.8 146 38.4
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 1.1e-10 72.0 130 38.5
CsaV3_1G033590 Cucumis sativus L. HOM05D015857 ORTHO05D017858 2.4e-10 70.9 52 61.5
Gorai.008G109800 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.4e-10 70.9 119 37.0
SalBow1G5660 Salvia bowleyana HOM05D000448 ORTHO05D000291 2.4e-10 70.9 148 33.1
Gohir.D12G100900 Gossypium hirsutum HOM05D000448 ORTHO05D000291 9.1e-10 68.9 119 36.1
SalBow1G5823 Salvia bowleyana HOM05D000448 ORTHO05D000291 9.1e-10 68.9 133 35.3
Sc23g0005360 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.6e-09 68.2 140 30.7
Gohir.D12G101250 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.0e-09 67.8 119 36.1
Gorai.008G110300 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.0e-09 67.8 119 36.1
Thecc.01G399600 Theobroma cacao HOM05D000448 ORTHO05D000291 2.0e-09 67.8 124 33.9
COL.COLO4_12382 Corchorus olitorius HOM05D000448 ORTHO05D000291 2.6e-09 67.4 140 33.6
Gohir.A12G098066 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.6e-09 67.4 119 36.1
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.5e-09 67.0 116 35.3
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.5e-09 67.0 119 33.6
SalBow1G8687 Salvia bowleyana HOM05D000448 ORTHO05D000291 3.5e-09 67.0 136 33.8
FAN06G3977 Fragaria x ananassa HOM05D000448 ORTHO05D000291 4.5e-09 66.6 120 37.5
CSS0044549 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 5.9e-09 66.2 134 31.3
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 5.9e-09 66.2 118 33.9
SalBow1G6693 Salvia bowleyana HOM05D000448 ORTHO05D000291 5.9e-09 66.2 122 34.4
Sc23g0005330 Simmondsia chinensis HOM05D000448 ORTHO05D000291 5.9e-09 66.2 142 31.0
Thecc.01G399400 Theobroma cacao HOM05D000448 ORTHO05D000291 5.9e-09 66.2 129 34.1
FvH4_7g09310 Fragaria vesca HOM05D000448 ORTHO05D000291 7.7e-09 65.9 146 33.6
RcHm_v2.0_Chr1g0345971 Rosa chinensis HOM05D000448 ORTHO05D000291 7.7e-09 65.9 146 33.6
SalBow1G4382 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.0e-08 65.5 143 35.0
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 1.3e-08 65.1 118 33.9
FAN10G1399 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.3e-08 65.1 148 31.8
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.3e-08 65.1 118 33.9
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 1.3e-08 65.1 119 37.0
SalBow1G5675 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.3e-08 65.1 144 31.9
Eucgr.B00705 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.7e-08 64.7 174 31.0
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 1.7e-08 64.7 119 37.0
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 1.7e-08 64.7 124 34.7
ClCG00G004190 Citrullus lanatus HOM05D000448 ORTHO05D000291 2.2e-08 64.3 125 35.2
ClCG08G009940 Citrullus lanatus HOM05D000448 ORTHO05D000291 2.2e-08 64.3 125 35.2
Sopen10g022780 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-08 64.3 75 45.3
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 2.2e-08 64.3 122 34.4
GSVIVG01015139001 Vitis vinifera HOM05D000448 ORTHO05D000291 2.2e-08 64.3 85 44.7
CAN.G1741.2 Capsicum annuum HOM05D000002 ORTHO05D000001 2.9e-08 63.9 93 41.9
FAN03G3153 Fragaria x ananassa HOM05D000448 ORTHO05D000291 2.9e-08 63.9 145 32.4
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 2.9e-08 63.9 68 47.1
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 2.9e-08 63.9 113 32.7
Sed0021821 Sechium edule HOM05D000002 ORTHO05D000001 2.9e-08 63.9 58 44.8
CAN.G128.92 Capsicum annuum HOM05D000002 ORTHO05D000001 3.8e-08 63.5 93 40.9
AUR62041976 Chenopodium quinoa HOM05D000448 ORTHO05D000291 3.8e-08 63.5 159 34.0
EL10Ac2g03995 Beta vulgaris HOM05D000448 ORTHO05D000291 5.0e-08 63.2 171 31.0
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 5.0e-08 63.2 109 33.9
CSS0028482 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 6.5e-08 62.8 141 30.5
MELO3C005085.2 Cucumis melo HOM05D015857 ORTHO05D017858 6.5e-08 62.8 54 51.9
Oeu011248.1 Olea europaea HOM05D000448 ORTHO05D000291 6.5e-08 62.8 118 33.9
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 6.5e-08 62.8 159 30.2
CSS0013072 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 8.5e-08 62.4 143 33.6
CSS0045842 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 8.5e-08 62.4 143 33.6
CANSAT25G1737 Cannabis sativa HOM05D000448 ORTHO05D000291 8.5e-08 62.4 119 35.3
CiPaw.13G024700 Carya illinoinensis HOM05D000448 ORTHO05D000291 8.5e-08 62.4 109 35.8
Gohir.D12G096850 Gossypium hirsutum HOM05D000448 ORTHO05D000291 8.5e-08 62.4 111 34.2
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 8.5e-08 62.4 119 36.1
vmacro03799 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 8.5e-08 62.4 150 32.0
Gohir.A12G098000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.1e-07 62.0 121 35.5
SalBow1G2545 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.1e-07 62.0 147 32.0
CSS0011346 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.5e-07 61.6 139 31.7
vmacro03798 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 1.5e-07 61.6 150 32.0
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.9e-07 61.2 148 31.1
CSS0031680 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.9e-07 61.2 140 31.4
SalBow1G1441 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.9e-07 61.2 148 31.8
SalBow1G5232 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.9e-07 61.2 145 31.0
Actinidia29315 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.5e-07 60.8 137 31.4
EL10Ac2g03996 Beta vulgaris HOM05D000448 ORTHO05D000291 2.5e-07 60.8 151 31.8
Gohir.D12G101000 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.5e-07 60.8 119 37.8
Gorai.008G109900 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.5e-07 60.8 119 37.8
Gorai.008G110200 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.5e-07 60.8 147 33.3
PGR004G2034 Punica granatum HOM05D000448 ORTHO05D000291 2.5e-07 60.8 111 33.3
QL04p028833 Quercus lobata HOM05D000448 ORTHO05D000291 2.5e-07 60.8 109 33.0
SalBow1G2587 Salvia bowleyana HOM05D000448 ORTHO05D000291 2.5e-07 60.8 133 33.8
Migut.I00414 Erythranthe guttata HOM05D000448 ORTHO05D000291 3.2e-07 60.5 180 29.4
Hma1.2p1_0196F.1_g085070 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 3.2e-07 60.5 117 36.8
Nn5g28226 Nelumbo nucifera HOM05D000448 ORTHO05D000291 3.2e-07 60.5 119 34.5
PGR004G0201 Punica granatum HOM05D000448 ORTHO05D000291 3.2e-07 60.5 109 33.9
Hund19573 Selenicereus undatus HOM05D000448 ORTHO05D000291 3.2e-07 60.5 48 52.1
Prupe.2G121500 Prunus persica HOM05D000448 ORTHO05D000291 4.2e-07 60.1 143 29.4
MSTRG.12045 Avicennia marina HOM05D000448 ORTHO05D000291 5.5e-07 59.7 163 28.8
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 5.5e-07 59.7 213 29.6
FvH4_2g31330 Fragaria vesca HOM05D000448 ORTHO05D000291 5.5e-07 59.7 134 33.6
FAN15G2979 Fragaria x ananassa HOM05D000448 ORTHO05D000291 5.5e-07 59.7 67 46.3
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 5.5e-07 59.7 113 31.9
SalBow1G6519 Salvia bowleyana HOM05D000448 ORTHO05D000291 5.5e-07 59.7 57 43.9
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 5.5e-07 59.7 196 30.1
GSVIVG01018306001 Vitis vinifera HOM05D000448 ORTHO05D000291 5.5e-07 59.7 116 33.6
Actinidia19136 Actinidia chinensis HOM05D000448 ORTHO05D000291 7.2e-07 59.3 89 43.8
SalBow1G5599 Salvia bowleyana HOM05D000448 ORTHO05D000291 7.2e-07 59.3 143 32.2
Actinidia25704 Actinidia chinensis HOM05D000448 ORTHO05D000291 9.4e-07 58.9 141 30.5
Dinv44044 Davidia involucrata HOM05D000448 ORTHO05D000291 9.4e-07 58.9 118 33.1
Eucgr.C03374 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.4e-07 58.9 156 32.7
Eucgr.D01263 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.4e-07 58.9 118 30.5
Oeu047500.1 Olea europaea HOM05D000448 ORTHO05D000291 9.4e-07 58.9 148 31.1
QL04p028978 Quercus lobata HOM05D000448 ORTHO05D000291 9.4e-07 58.9 115 34.8
SGA_v2.0_scaffold20G09213 Striga asiatica HOM05D000448 ORTHO05D000291 9.4e-07 58.9 143 30.8
MSTRG.12047 Avicennia marina HOM05D000448 ORTHO05D000291 1.2e-06 58.5 145 30.3
CSS0002364 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.2e-06 58.5 174 28.7
CSS0023530 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.2e-06 58.5 174 28.7
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.2e-06 58.5 118 30.5
COL.COLO4_30724 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.2e-06 58.5 212 28.8
Gohir.A12G098033 Gossypium hirsutum HOM05D000448 ORTHO05D000291 1.2e-06 58.5 139 30.9
RcHm_v2.0_Chr5g0006001 Rosa chinensis HOM05D000448 ORTHO05D000291 1.2e-06 58.5 137 32.1
SalBow1G2880 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.2e-06 58.5 145 33.1
GSVIVG01015136001 Vitis vinifera HOM05D000448 ORTHO05D000291 1.2e-06 58.5 74 45.9
arahy.Tifrunner.gnm1.ann1.PR1UBX Arachis hypogaea HOM05D000448 ORTHO05D000291 1.6e-06 58.2 165 31.5
CSS0050228 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.6e-06 58.2 201 26.4
AUR62043591 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.6e-06 58.2 39 66.7
Hma1.2p1_0231F.1_g097530 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.6e-06 58.2 162 32.1
Hma1.2p1_0231F.1_g097610 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.6e-06 58.2 162 32.1
Hma1.2p1_0231F.1_g097613 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.6e-06 58.2 162 32.1
Manes.05G056601 Manihot esculenta HOM05D000448 ORTHO05D000291 1.6e-06 58.2 127 32.3
SalBow1G5239 Salvia bowleyana HOM05D000448 ORTHO05D000291 1.6e-06 58.2 174 29.9
Cfa011048 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.1e-06 57.8 80 36.2
Cc08_g01410 Coffea canephora HOM05D000448 ORTHO05D000291 2.1e-06 57.8 184 28.8
ECA246G1242 Erigeron canadensis HOM05D000308 ORTHO05D000001 2.1e-06 57.8 114 34.2
Gohir.D12G101100 Gossypium hirsutum HOM05D000448 ORTHO05D000291 2.1e-06 57.8 121 34.7
Gorai.008G110100 Gossypium raimondii HOM05D000448 ORTHO05D000291 2.1e-06 57.8 121 34.7
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 2.1e-06 57.8 144 34.0
Peaxi162Scf00565g00719 Petunia axillaris HOM05D000448 ORTHO05D000291 2.1e-06 57.8 170 27.1
Peaxi162Scf01938g00005 Petunia axillaris HOM05D000448 ORTHO05D000291 2.1e-06 57.8 170 27.1
Potri.006G223800 Populus trichocarpa HOM05D000448 ORTHO05D000291 2.1e-06 57.8 145 31.7
CAN.G311.136 Capsicum annuum HOM05D000448 ORTHO05D000291 2.7e-06 57.4 57 43.9
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.7e-06 57.4 121 34.7
SalBow1G6244 Salvia bowleyana HOM05D000448 ORTHO05D000291 2.7e-06 57.4 145 32.4
vmacro03794 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 2.7e-06 57.4 171 30.4
Actinidia38517 Actinidia chinensis HOM05D000448 ORTHO05D000291 3.6e-06 57.0 76 43.4
CsaV3_6G032080 Cucumis sativus L. HOM05D000448 ORTHO05D000291 3.6e-06 57.0 47 57.4
Migut.A00097 Erythranthe guttata HOM05D000448 ORTHO05D000291 3.6e-06 57.0 145 29.7
FAN24G3054 Fragaria x ananassa HOM05D000448 ORTHO05D000291 3.6e-06 57.0 162 31.5
SalBow1G0913 Salvia bowleyana HOM05D000448 ORTHO05D000291 3.6e-06 57.0 146 30.8
Sc06g0006860 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.6e-06 57.0 65 46.2
Thecc.01G398400 Theobroma cacao HOM05D000448 ORTHO05D000291 3.6e-06 57.0 129 31.8
AUR62043766 Chenopodium quinoa HOM05D000448 ORTHO05D000291 4.7e-06 56.6 121 34.7
Cc08_g01420 Coffea canephora HOM05D000448 ORTHO05D000291 4.7e-06 56.6 156 28.8
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 4.7e-06 56.6 141 32.6
SalBow4G1393 Salvia bowleyana HOM05D000448 ORTHO05D000291 4.7e-06 56.6 150 29.3
Thecc.01G399100 Theobroma cacao HOM05D000448 ORTHO05D000291 4.7e-06 56.6 128 32.0
C08p15500 Brassica napus HOM05D000002 ORTHO05D000075 6.1e-06 56.2 80 42.5
CsaV3_6G032040 Cucumis sativus L. HOM05D000448 ORTHO05D000291 6.1e-06 56.2 107 33.6
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 6.1e-06 56.2 107 35.5
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 6.1e-06 56.2 151 29.1
Thecc.01G399200 Theobroma cacao HOM05D000448 ORTHO05D000291 6.1e-06 56.2 128 32.0
GSVIVG01018305001 Vitis vinifera HOM05D000448 ORTHO05D000291 6.1e-06 56.2 109 32.1
CSS0025223 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 8.0e-06 55.8 92 34.8
CSS0042425 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 8.0e-06 55.8 131 30.5
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 8.0e-06 55.8 142 31.0
FAN28G0857 Fragaria x ananassa HOM05D000448 ORTHO05D000291 8.0e-06 55.8 165 29.1
QL02p061270 Quercus lobata HOM05D000448 ORTHO05D000291 8.0e-06 55.8 174 29.9


User provided reference genes

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