Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.4e-175 619.8 381 100.0
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 9.9e-145 517.3 369 91.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 6.7e-101 371.7 389 66.1
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 9.8e-68 261.5 330 56.1
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 7.1e-50 202.2 415 36.9
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.7e-49 200.3 349 40.1
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.5e-47 194.5 413 35.8
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 4.3e-47 193.0 410 37.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 9.6e-47 191.8 396 38.1
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.2e-46 191.4 410 36.1
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 3.6e-46 189.9 404 37.1
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 3.1e-45 186.8 429 36.1
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-44 184.9 353 37.7
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 4.4e-44 183.0 422 35.1
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.8e-44 182.6 359 37.6
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 7.6e-44 182.2 352 37.8
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 7.6e-44 182.2 353 39.1
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 6.4e-43 179.1 395 40.5
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 6.4e-43 179.1 430 35.1
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.1e-42 178.3 440 34.3
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 1.9e-42 177.6 371 36.1
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 4.2e-42 176.4 418 36.4
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 5.4e-42 176.0 415 36.6
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 9.3e-42 175.3 440 34.1
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.2e-41 174.9 440 34.1
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 2.7e-41 173.7 419 34.4
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 3.5e-41 173.3 440 33.9
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 3.5e-41 173.3 436 35.1
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.8e-41 172.2 369 35.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.6e-40 169.1 346 36.1
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.6e-40 169.1 415 36.4
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 8.7e-40 168.7 348 35.9
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.9e-39 167.5 414 34.5
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.9e-39 167.5 358 37.2
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.3e-39 166.8 348 35.6
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 7.3e-39 165.6 365 36.7
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 2.1e-38 164.1 404 34.9
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 3.6e-38 163.3 394 34.0
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.6e-38 163.3 339 34.8
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 6.2e-38 162.5 414 34.8
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 6.2e-38 162.5 369 39.3
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.4e-37 161.4 347 37.5
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.8e-37 161.0 354 36.7
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.8e-37 161.0 318 46.2
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 3.1e-37 160.2 333 37.2
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 4.0e-37 159.8 301 39.5
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.5e-36 157.9 425 32.5
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.5e-36 157.9 338 37.0
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.6e-36 157.1 328 39.3
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 2.6e-36 157.1 329 38.0
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 3.4e-36 156.8 410 34.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 9.9e-36 155.2 403 34.0
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 8.4e-35 152.1 373 36.5
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.1e-34 151.8 363 34.7
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.4e-34 151.4 367 35.4
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.9e-34 151.0 371 34.0
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 9.3e-34 148.7 376 33.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.6e-33 147.9 344 35.2
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 2.1e-33 147.5 326 35.9
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 3.5e-33 146.7 418 33.3
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 7.9e-33 145.6 401 32.7
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.0e-32 145.2 404 30.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.7e-32 144.4 341 34.9
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 8.7e-32 142.1 365 33.2
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.5e-31 141.4 391 40.4
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.5e-31 141.4 342 37.4
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.5e-31 141.4 352 33.2
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 7.3e-31 139.0 353 34.0
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.4e-29 134.8 326 39.6
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.8e-29 134.4 342 42.1
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.5e-28 131.3 354 32.8
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.5e-28 131.3 304 37.2
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 2.0e-28 131.0 363 31.7
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 3.4e-28 130.2 334 41.3
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 4.5e-28 129.8 329 38.9
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 9.9e-28 128.6 330 36.1
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.9e-27 126.3 384 29.4
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 8.4e-27 125.6 371 36.7
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 8.4e-27 125.6 309 36.9
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 2.4e-26 124.0 391 31.7
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 3.5e-25 120.2 322 32.9
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 5.1e-24 116.3 366 31.4
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.5e-23 114.8 288 41.3
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.5e-23 114.8 331 31.4
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.6e-22 111.3 220 33.6
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 6.2e-22 109.4 316 32.3
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.0e-21 106.7 367 30.2
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 4.0e-21 106.7 334 30.8
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 5.3e-21 106.3 382 27.5
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 2.6e-20 104.0 305 30.5
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.4e-20 103.6 263 34.6
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 8.4e-19 99.0 338 36.1
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.9e-18 97.8 341 32.3
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.2e-17 95.1 128 43.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 2.7e-17 94.0 292 35.6
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.6e-17 93.2 169 31.4
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 6.0e-17 92.8 322 32.9
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 7.9e-17 92.4 125 40.8
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-16 91.7 322 32.9
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-16 91.7 322 32.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 2.3e-16 90.9 316 38.0
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 6.7e-16 89.4 316 33.9
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 8.7e-16 89.0 316 35.1
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 8.7e-16 89.0 316 35.1
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 1.1e-15 88.6 289 31.1
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 1.5e-15 88.2 316 38.3
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 2.5e-15 87.4 317 34.4
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.5e-15 87.4 317 34.4
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 4.3e-15 86.7 315 34.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-14 85.1 323 33.7
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.8e-14 84.0 318 34.0
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 2.8e-14 84.0 319 29.8
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 3.7e-14 83.6 278 27.7
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 4.8e-14 83.2 319 35.1
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 6.2e-14 82.8 323 33.4
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 8.2e-14 82.4 323 32.8
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 8.2e-14 82.4 323 32.8
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.1e-13 82.0 111 47.7
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.4e-13 81.6 48 89.6
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 3.1e-13 80.5 317 33.4
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 6.9e-13 79.3 47 89.4
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.9e-13 79.3 189 38.6
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-12 78.6 323 33.1
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.5e-12 78.2 47 87.2
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 2.0e-12 77.8 170 42.4
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.5e-12 76.6 279 30.1
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.3e-11 75.1 251 28.7
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.9e-11 73.9 61 73.8
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.9e-11 73.9 316 33.9
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.4e-10 71.6 295 34.6
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-08 65.1 173 34.7
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 2.3e-08 64.3 118 33.9
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 2.8e-06 57.4 379 25.9
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 6.3e-06 56.2 249 26.9


User provided reference genes

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