Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G025300 Cucumis sativus L. HOM05D000533 ORTHO05D001069 5.8e-147 524.2 270 100.0
CsaV3_6G025230 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.0e-79 300.8 147 100.0
CsaV3_UNG208530 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.7e-74 283.5 147 95.9
CsaV3_6G025220 Cucumis sativus L. HOM05D000533 ORTHO05D001069 2.6e-54 216.5 103 100.0
Sed0020382 Sechium edule HOM05D000533 ORTHO05D001069 1.7e-50 203.8 93 100.0
SabraMtG0006600 Salix brachista HOM05D000533 ORTHO05D001069 1.1e-49 201.1 122 78.7
Ca_17160_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.7e-45 187.2 261 44.8
Ca_26706_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.7e-45 187.2 261 44.8
RhsimMtG0002200 Rhododendron simsii HOM05D000533 ORTHO05D001069 3.7e-45 186.0 93 93.5
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 6.3e-45 185.3 89 94.4
HanXRQChr14g0434371 Helianthus annuus HOM05D000533 ORTHO05D001069 1.2e-43 181.0 246 46.3
CsaV3_UNG208520 Cucumis sativus L. HOM05D000533 ORTHO05D001069 3.5e-43 179.5 105 86.7
HanXRQChr08g0236031 Helianthus annuus HOM05D000533 ORTHO05D001069 5.9e-43 178.7 220 48.2
Dinv06691 Davidia involucrata HOM05D000533 ORTHO05D001069 7.7e-43 178.3 191 52.9
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 1.0e-42 177.9 89 92.1
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 1.3e-42 177.6 84 97.6
Sopen05g012860 Solanum pennellii HOM05D000533 ORTHO05D001069 1.7e-42 177.2 85 96.5
CDE02G4047 Ceratophyllum demersum HOM05D000533 ORTHO05D001069 3.8e-42 176.0 85 96.5
CDE02G3581 Ceratophyllum demersum HOM05D000533 ORTHO05D001069 5.0e-42 175.6 84 96.4
Peaxi162Scf00197g00027 Petunia axillaris HOM05D000533 ORTHO05D001069 8.6e-42 174.9 83 96.4
Aqoxy3G01140 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 1.1e-41 174.5 85 95.3
HanXRQChr10g0297201 Helianthus annuus HOM05D000533 ORTHO05D001069 1.1e-41 174.5 221 47.5
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 1.9e-41 173.7 218 47.2
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 1.9e-41 173.7 218 47.2
DCAR_032449 Daucus carota HOM05D000533 ORTHO05D001069 2.5e-41 173.3 218 47.2
unitig_87.g27981 Utricularia gibba HOM05D000533 ORTHO05D001069 3.3e-41 172.9 85 96.5
HanXRQChr01g0003461 Helianthus annuus HOM05D000533 ORTHO05D001069 5.6e-41 172.2 84 95.2
Lalb_Chr00c24g0407301 Lupinus albus HOM05D000533 ORTHO05D001069 9.5e-41 171.4 84 94.0
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 1.2e-40 171.0 84 92.9
Aqoxy4G01613 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.1e-40 170.2 84 94.0
Cfa023037 Carpinus fangiana HOM05D000533 ORTHO05D001069 2.1e-40 170.2 119 70.6
PGSC0003DMG400030943 Solanum tuberosum HOM05D000533 ORTHO05D001069 2.1e-40 170.2 85 91.8
Solyc00g500184.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.8e-40 169.9 81 96.3
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 3.6e-40 169.5 81 97.5
TPR.G22491 Trifolium pratense HOM05D000533 ORTHO05D001069 3.6e-40 169.5 84 92.9
BolSC28t60325H Brassica oleracea HOM05D000533 ORTHO05D001069 6.1e-40 168.7 259 42.9
BolSC28t60427H Brassica oleracea HOM05D000533 ORTHO05D001069 6.1e-40 168.7 259 42.9
BraSC159t45715Z Brassica rapa HOM05D000533 ORTHO05D001069 6.1e-40 168.7 259 42.9
Cpa.g.sc263.14 Carica papaya HOM05D000533 ORTHO05D001069 8.0e-40 168.3 84 94.0
Sp3g25570 Schrenkiella parvula HOM05D000533 ORTHO05D001069 2.3e-39 166.8 84 92.9
SGA_v2.0_scaffold400G50831 Striga asiatica HOM05D000533 ORTHO05D001069 3.0e-39 166.4 218 46.3
Sopen12g017210 Solanum pennellii HOM05D000533 ORTHO05D001069 5.2e-39 165.6 85 90.6
A04p09590 Brassica napus HOM05D000533 ORTHO05D001069 8.9e-39 164.9 264 42.8
C01p34660 Brassica napus HOM05D000533 ORTHO05D001069 8.9e-39 164.9 252 41.7
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 1.2e-38 164.5 81 91.4
Lsat_1_v5_gn_7_67821 Lactuca sativa HOM05D000533 ORTHO05D001069 1.5e-38 164.1 89 85.4
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 2.0e-38 163.7 81 95.1
Thhalv10028891m.g Eutrema salsugineum HOM05D000533 ORTHO05D001069 3.4e-38 162.9 216 45.8
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 9.8e-38 161.4 218 45.4
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 6.4e-37 158.7 81 92.6
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 6.4e-37 158.7 81 92.6
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 8.3e-37 158.3 81 92.6
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 8.3e-37 158.3 81 92.6
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 7.0e-36 155.2 189 47.1
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 7.0e-36 155.2 189 47.1
PGSC0003DMG400029134 Solanum tuberosum HOM05D000533 ORTHO05D001069 1.2e-35 154.5 80 90.0
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.0e-35 153.7 81 91.4
Nitab4.5_0002418g0130 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.5e-35 152.9 83 86.7
Nitab4.5_0004030g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.3e-34 150.2 71 93.0
Nitab4.5_0008916g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-33 147.9 84 79.8
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.3e-33 146.4 81 82.7
CsaV3_6G024190 Cucumis sativus L. HOM05D000533 ORTHO05D001069 4.3e-33 146.0 126 69.0
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 9.5e-33 144.8 80 83.8
ATR1155G032 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.1e-31 139.8 80 80.0
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 2.0e-30 137.1 64 96.9
Nitab4.5_0000172g0870 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.0e-30 137.1 71 85.9
Aa31csc1081G30 Aethionema arabicum HOM05D000533 ORTHO05D001069 9.8e-30 134.8 208 40.9
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 9.8e-30 134.8 82 78.0
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 1.1e-28 131.3 81 72.8
CAN.G267.14 Capsicum annuum HOM05D000533 ORTHO05D001069 9.2e-28 128.3 73 80.8
arahy.Tifrunner.gnm1.ann1.AMUJ6F Arachis hypogaea HOM05D000533 ORTHO05D001069 1.6e-27 127.5 58 94.8
CAN.G1.13 Capsicum annuum HOM05D000533 ORTHO05D001069 4.3e-25 119.4 64 79.7
CAN.G566.26 Capsicum annuum HOM05D000533 ORTHO05D001069 2.1e-24 117.1 64 84.4
ATR1208G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 8.9e-23 111.7 189 35.4
Nitab4.5_0001153g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.6e-22 110.2 65 76.9
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 4.4e-22 109.4 81 63.0
COL.COLO4_01459 Corchorus olitorius HOM05D000533 ORTHO05D001069 2.2e-21 107.1 81 61.7
CAN.G993.10 Capsicum annuum HOM05D000533 ORTHO05D001069 2.9e-21 106.7 55 89.1
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 8.3e-21 105.1 81 55.6
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 1.4e-20 104.4 81 54.3
SMO053G0001 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 1.4e-20 104.4 85 60.0
CsaV3_6G024030 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.2e-19 101.3 54 100.0
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 3.0e-18 96.7 67 61.2
CsaV3_6G024020 Cucumis sativus L. HOM05D000533 ORTHO05D019810 3.9e-18 96.3 41 100.0
Solyc12g036600.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 5.1e-18 95.9 53 84.9
HanXRQChr04g0109051 Helianthus annuus HOM05D000533 ORTHO05D001069 4.3e-17 92.8 45 100.0
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 5.6e-17 92.4 85 51.8
CsaV3_6G024180 Cucumis sativus L. HOM05D000533 ORTHO05D019810 8.1e-16 88.6 37 100.0
Ah.10g028340 Amaranthus hybridus HOM05D000533 ORTHO05D001069 6.8e-15 85.5 41 97.6
AUR62043913 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.9e-15 85.1 55 80.0
Nitab4.5_0006806g0120 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.0e-14 84.0 44 79.5
GSVIVG01006222001 Vitis vinifera HOM05D000533 ORTHO05D001069 2.0e-14 84.0 46 78.3
arahy.Tifrunner.gnm1.ann1.21N8RB Arachis hypogaea HOM05D000533 ORTHO05D019810 7.6e-14 82.0 38 89.5
arahy.Tifrunner.gnm1.ann1.31J2CX Arachis hypogaea HOM05D000533 ORTHO05D019810 7.6e-14 82.0 38 89.5
arahy.Tifrunner.gnm1.ann1.4SAZ8F Arachis hypogaea HOM05D000533 ORTHO05D019810 7.6e-14 82.0 38 89.5
arahy.Tifrunner.gnm1.ann1.5LDT0K Arachis hypogaea HOM05D000533 ORTHO05D019810 7.6e-14 82.0 38 89.5
Lsat_1_v5_gn_5_16221 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-14 82.0 45 84.4
arahy.Tifrunner.gnm1.ann1.4DS86I Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-13 81.3 38 86.8
arahy.Tifrunner.gnm1.ann1.AFL9HK Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-13 81.3 38 86.8
arahy.Tifrunner.gnm1.ann1.I47HSX Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-13 81.3 38 86.8
arahy.Tifrunner.gnm1.ann1.LX7XQ5 Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-13 81.3 38 86.8
arahy.Tifrunner.gnm1.ann1.P9L1XB Arachis hypogaea HOM05D000533 ORTHO05D001069 1.3e-13 81.3 38 86.8
BraSC48t46306Z Brassica rapa HOM05D000533 ORTHO05D001069 8.4e-13 78.6 41 92.7
Sopen01g027210 Solanum pennellii HOM05D000533 ORTHO05D001069 1.4e-12 77.8 33 93.9
Aqoxy84s002 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.4e-12 77.0 81 43.2
Nitab4.5_0001034g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 9.2e-12 75.1 53 71.7
Nitab4.5_0000120g0060 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.3e-10 71.2 41 87.8
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 3.9e-10 69.7 67 55.2
FAN26G3352 Fragaria x ananassa HOM05D000533 ORTHO05D001069 5.1e-10 69.3 35 88.6
SHI25676 Sapria himalayana HOM05D000533 ORTHO05D001069 5.1e-10 69.3 54 61.1
Solyc09g031550.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 5.1e-10 69.3 41 68.3
FAN26G0937 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.5e-09 67.0 81 49.4
Ca_29118_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.6e-08 64.3 82 39.0
CAN.G247.8 Capsicum annuum HOM05D000533 ORTHO05D006664 2.1e-08 63.9 31 93.5
Ca_26704_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 2.8e-08 63.5 33 78.8
Nitab4.5_0001152g0630 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.2e-08 62.4 30 93.3
Nitab4.5_0012067g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-07 61.2 30 90.0
Peaxi162Scf00197g00048 Petunia axillaris HOM05D000533 ORTHO05D001069 1.4e-07 61.2 81 43.2
SHI06682 Sapria himalayana HOM05D000533 ORTHO05D001069 1.4e-07 61.2 71 45.1
Nitab4.5_0001291g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.1e-07 60.1 32 87.5
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.5e-06 57.8 24 91.7
Sopen10g026770 Solanum pennellii HOM05D000533 ORTHO05D001069 2.6e-06 57.0 28 82.1
SHI11894 Sapria himalayana HOM05D000533 ORTHO05D001069 4.4e-06 56.2 47 61.7
Eucgr.K01620 Eucalyptus grandis HOM05D000533 ORTHO05D001069 9.9e-06 55.1 58 41.4


User provided reference genes

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