Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 2.6e-234 815.1 433 100.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 6.5e-193 677.6 417 88.5
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.7e-169 599.7 419 79.7
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 1.6e-114 417.2 425 60.7
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 4.7e-42 176.4 401 36.2
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.5e-35 154.8 364 35.4
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.9e-35 154.5 404 36.1
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 2.8e-34 150.6 358 38.3
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 4.7e-34 149.8 364 37.4
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 3.1e-33 147.1 399 36.8
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 7.6e-32 142.5 423 33.6
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 6.4e-31 139.4 383 35.0
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 3.0e-28 130.6 337 37.1
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 7.3e-27 125.9 379 32.5
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 7.3e-27 125.9 379 32.5
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.2e-26 125.2 425 33.6
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.1e-26 124.4 409 32.0
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.1e-26 124.4 379 32.2
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 2.1e-26 124.4 335 36.4
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 3.6e-26 123.6 433 31.4
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 6.2e-26 122.9 355 37.2
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 6.2e-26 122.9 449 31.0
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 8.1e-26 122.5 398 33.2
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 6.8e-25 119.4 436 30.7
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 6.8e-25 119.4 454 31.9
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 1.2e-24 118.6 407 32.4
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.2e-24 118.6 387 33.9
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 7.6e-24 115.9 354 35.0
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 1.3e-23 115.2 416 30.5
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 8.4e-23 112.5 429 30.3
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 4.2e-22 110.2 395 32.7
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 5.4e-22 109.8 387 32.0
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.2e-21 108.6 367 32.2
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.2e-21 108.6 415 32.0
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 2.1e-21 107.8 441 29.3
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.7e-21 107.5 371 30.2
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 6.0e-21 106.3 345 33.6
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 6.0e-21 106.3 442 29.6
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 1.0e-20 105.5 389 30.3
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 3.0e-20 104.0 367 31.6
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 6.6e-20 102.8 460 29.1
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 8.7e-20 102.4 355 34.4
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 8.7e-20 102.4 488 27.9
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.5e-19 101.7 314 32.5
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 2.1e-18 97.8 364 31.9
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 3.6e-18 97.1 474 27.6
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 6.2e-18 96.3 422 31.0
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 8.1e-18 95.9 470 27.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 8.1e-18 95.9 354 32.5
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.4e-17 94.4 470 28.7
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 2.4e-17 94.4 357 33.1
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 1.2e-16 92.0 402 30.3
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.2e-16 92.0 497 27.4
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 1.5e-16 91.7 403 30.3
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 1.5e-16 91.7 408 31.1
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 5.8e-16 89.7 330 32.4
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 9.9e-16 89.0 337 31.8
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 4.9e-15 86.7 389 29.3
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 8.4e-15 85.9 398 28.6
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 1.4e-14 85.1 336 32.7
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.4e-14 85.1 201 34.8
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 1.9e-14 84.7 356 29.5
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 5.4e-14 83.2 376 29.5
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 5.4e-14 83.2 394 28.9
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 5.4e-14 83.2 401 28.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.6e-13 81.6 396 29.0
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 1.6e-13 81.6 428 29.7
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.3e-12 78.6 305 32.8
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 2.3e-12 77.8 395 29.1
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 2.3e-12 77.8 397 27.5
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 3.9e-12 77.0 376 27.9
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 3.9e-12 77.0 377 29.4
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 2.5e-11 74.3 358 30.7
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 4.3e-11 73.6 395 28.4
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 9.6e-11 72.4 411 27.5
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 4.8e-10 70.1 292 30.8
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 4.0e-09 67.0 388 27.3
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 3.4e-08 63.9 455 27.0
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 4.5e-08 63.5 360 28.9
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 4.5e-08 63.5 360 28.9
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 4.5e-08 63.5 360 28.9
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 9.9e-08 62.4 378 28.8
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.7e-07 61.6 426 27.5
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 2.9e-07 60.8 381 27.3
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 2.9e-07 60.8 448 26.3
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 3.8e-07 60.5 217 33.6
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 6.4e-07 59.7 212 28.8
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 1.4e-06 58.5 373 26.0
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 3.2e-06 57.4 267 29.2


User provided reference genes

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