Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 1.7e-175 619.4 355 100.0
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 3.4e-107 392.5 361 72.0
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 6.7e-87 325.1 210 88.1
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 1.1e-39 168.3 359 42.9
MELO3C025717.2 Cucumis melo HOM05D021867 ORTHO05D008438 2.9e-37 160.2 118 78.0
MELO3C035163.2 Cucumis melo HOM05D021867 ORTHO05D008438 6.6e-26 122.5 98 87.8
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 1.5e-17 94.7 71 73.2
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 1.9e-17 94.4 193 44.6
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.2e-14 85.1 67 67.2
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 2.2e-13 80.9 82 53.7
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 4.9e-13 79.7 75 60.0
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 8.4e-13 79.0 78 60.3
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 1.9e-12 77.8 59 71.2
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 2.4e-12 77.4 78 60.3
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 4.2e-12 76.6 160 39.4
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 4.2e-12 76.6 212 35.4
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 5.5e-12 76.3 59 69.5
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 7.1e-12 75.9 115 46.1
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 7.1e-12 75.9 278 32.7
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 9.3e-12 75.5 113 46.9
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 2.1e-11 74.3 162 38.9
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 3.5e-11 73.6 78 57.7
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 4.6e-11 73.2 101 52.5
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 4.6e-11 73.2 176 36.9
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 6.0e-11 72.8 116 46.6
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 7.9e-11 72.4 214 35.0
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 1.0e-10 72.0 165 39.4
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.0e-10 72.0 60 63.3
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 1.0e-10 72.0 60 65.0
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 1.3e-10 71.6 269 32.0
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.3e-10 71.6 196 34.2
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.8e-10 71.2 220 35.9
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.8e-10 71.2 172 37.2
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 1.8e-10 71.2 205 34.1
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 3.0e-10 70.5 60 63.3
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 3.0e-10 70.5 56 69.6
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 5.1e-10 69.7 151 38.4
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 6.7e-10 69.3 109 40.4
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 8.7e-10 68.9 253 31.6
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 1.1e-09 68.6 223 34.1
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 1.5e-09 68.2 79 54.4
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 1.5e-09 68.2 81 50.6
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.9e-09 67.8 117 41.9
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 2.5e-09 67.4 211 34.6
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 2.5e-09 67.4 147 38.1
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 3.3e-09 67.0 77 51.9
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 3.3e-09 67.0 77 51.9
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 3.3e-09 67.0 77 51.9
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 4.3e-09 66.6 148 38.5
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 7.4e-09 65.9 67 53.7
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 7.4e-09 65.9 101 44.6
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 1.3e-08 65.1 61 57.4
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 1.6e-08 64.7 280 30.4
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.6e-08 64.7 60 61.7
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 2.1e-08 64.3 79 45.6
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 2.8e-08 63.9 113 38.1
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 2.8e-08 63.9 113 38.1
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 3.7e-08 63.5 110 44.5
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 3.7e-08 63.5 117 38.5
QL01p035383 Quercus lobata HOM05D007431 ORTHO05D008438 3.7e-08 63.5 177 35.6
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 4.8e-08 63.2 237 31.6
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 6.2e-08 62.8 61 54.1
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 6.2e-08 62.8 64 59.4
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 6.2e-08 62.8 67 55.2
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 6.2e-08 62.8 102 38.2
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 6.2e-08 62.8 67 55.2
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 8.1e-08 62.4 67 49.3
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 1.1e-07 62.0 155 36.1
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 1.1e-07 62.0 61 55.7
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.1e-07 62.0 64 59.4
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 1.1e-07 62.0 66 53.0
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 1.1e-07 62.0 66 53.0
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.4e-07 61.6 255 31.4
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 1.8e-07 61.2 281 32.0
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.4e-07 60.8 64 57.8
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 3.1e-07 60.5 137 37.2
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 3.1e-07 60.5 64 59.4
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 4.0e-07 60.1 60 53.3
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 4.0e-07 60.1 55 58.2
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 4.0e-07 60.1 243 31.7
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 5.3e-07 59.7 259 30.1
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 6.9e-07 59.3 199 33.7
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 1.2e-06 58.5 60 56.7
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.2e-06 58.5 111 34.2
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.0e-06 57.8 205 33.7
Medtr8g097140 Medicago truncatula HOM05D007431 ORTHO05D008438 3.4e-06 57.0 235 30.2
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 7.6e-06 55.8 114 39.5
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 7.6e-06 55.8 216 31.9
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 7.6e-06 55.8 113 35.4
Migut.E00592 Erythranthe guttata HOM05D007431 ORTHO05D008438 1.0e-05 55.5 62 46.8
Migut.E00657 Erythranthe guttata HOM05D007431 ORTHO05D008438 1.0e-05 55.5 62 46.8
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 1.0e-05 55.5 258 31.4


User provided reference genes

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