Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 0.0e+00 2592.4 1336 100.0
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 0.0e+00 2183.3 1375 85.8
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 0.0e+00 1840.5 1356 75.9
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 0.0e+00 1376.3 1339 60.8
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 6.5e-66 257.3 1466 26.9
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.2e-61 242.3 1392 26.9
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 1.4e-57 229.6 1515 26.5
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 1.8e-55 222.6 1553 26.5
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 8.8e-55 220.3 1399 27.4
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.1e-54 219.9 1627 25.1
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 6.3e-53 214.2 1395 26.6
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 8.2e-53 213.8 497 36.6
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 2.0e-51 209.1 539 36.7
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.5e-51 208.0 1454 25.8
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 1.0e-50 206.8 1505 25.2
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 3.8e-50 204.9 1378 25.8
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 6.5e-50 204.1 1449 26.4
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.6e-48 198.4 1372 26.6
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 4.7e-48 198.0 1559 24.7
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 2.3e-47 195.7 1432 27.2
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 2.3e-47 195.7 1435 26.0
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.5e-46 193.0 1459 25.2
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 4.4e-46 191.4 1401 25.7
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 3.7e-45 188.3 1383 25.3
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 6.3e-45 187.6 1434 25.7
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 1.2e-43 183.3 527 34.7
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 3.6e-40 171.8 1327 24.6
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.6e-38 165.6 1477 25.1
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 7.5e-38 164.1 1414 24.5
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 1.3e-37 163.3 1421 24.8
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 6.3e-37 161.0 467 34.3
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.8e-36 159.5 1379 24.1
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 3.1e-36 158.7 509 33.0
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 4.1e-36 158.3 574 32.9
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 5.4e-36 157.9 236 47.5
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 2.0e-35 156.0 1371 24.2
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 8.6e-34 150.6 1396 24.8
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 1.1e-33 150.2 584 29.8
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 7.2e-33 147.5 466 32.8
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 9.5e-33 147.1 1384 24.3
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 6.1e-32 144.4 971 27.2
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 1.4e-31 143.3 1420 24.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.8e-31 142.9 699 28.3
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 1.8e-31 142.9 1311 24.3
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.8e-31 142.9 1423 23.8
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 5.2e-31 141.4 1415 24.0
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 9.8e-30 137.1 476 31.1
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 3.7e-29 135.2 1387 23.4
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.1e-28 133.7 1549 24.0
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 5.4e-28 131.3 1374 24.0
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 7.0e-28 131.0 548 29.9
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.2e-27 130.2 1391 23.7
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 3.5e-27 128.6 218 41.7
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 7.8e-27 127.5 1405 23.8
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 1.0e-26 127.1 398 31.4
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 1.3e-26 126.7 625 28.3
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 6.6e-26 124.4 1313 23.5
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.9e-25 122.9 1341 23.5
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.3e-25 121.7 1555 22.8
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 7.3e-25 120.9 553 28.9
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 4.7e-24 118.2 150 48.0
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 5.2e-23 114.8 806 25.2
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 3.4e-22 112.1 433 29.8
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 3.4e-22 112.1 1291 23.9
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 4.9e-21 108.2 214 36.9
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 1.1e-20 107.1 232 36.2
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 5.4e-20 104.8 236 33.9
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 9.2e-20 104.0 129 47.3
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 2.0e-19 102.8 1388 23.2
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 2.0e-19 102.8 1316 22.9
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 1.7e-18 99.8 170 40.6
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 6.6e-18 97.8 603 27.9
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.1e-17 97.1 539 26.0
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 1.1e-17 97.1 159 40.9
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.5e-17 96.7 1387 23.1
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.9e-17 96.3 1262 23.5
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 9.5e-17 94.0 1380 22.4
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 4.7e-16 91.7 1391 22.1
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 4.7e-16 91.7 1282 23.3
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 6.2e-16 91.3 1374 21.6
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.2e-16 91.3 94 51.1
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.1e-15 90.5 127 40.9
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 1.4e-15 90.1 132 43.2
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.4e-15 90.1 131 41.2
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 2.3e-15 89.4 547 27.4
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-15 88.6 168 38.1
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 8.9e-15 87.4 170 35.9
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 2.6e-14 85.9 141 41.1
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.3e-13 83.6 54 74.1
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.1e-12 80.5 1390 22.4
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.4e-12 80.1 69 58.0
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 2.4e-12 79.3 56 66.1
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 2.4e-12 79.3 80 52.5
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.1e-12 78.6 177 36.2
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 7.0e-12 77.8 234 33.8
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 2.7e-11 75.9 293 30.4
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 7.8e-11 74.3 56 60.7
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 1.3e-10 73.6 44 77.3
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 1.3e-10 73.6 123 39.0
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 1.7e-10 73.2 195 33.3
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 5.1e-10 71.6 192 33.3
Os11g0103100 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 8.6e-10 70.9 179 33.0
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 1.5e-09 70.1 150 37.3
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.5e-09 69.3 238 31.1
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.5e-09 69.3 59 64.4
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 3.3e-09 68.9 275 24.7
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 3.3e-09 68.9 114 39.5
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 9.5e-09 67.4 141 39.0
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.2e-08 67.0 515 25.8
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.2e-08 67.0 431 25.3
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.2e-08 67.0 1101 23.0
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 4.7e-08 65.1 42 69.0
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 4.7e-08 65.1 408 26.0
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.1e-07 63.9 532 25.8
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.3e-07 62.8 409 26.2
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.8e-07 61.2 205 29.3
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 8.9e-07 60.8 453 24.3
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.2e-06 60.5 414 25.1
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 2.0e-06 59.7 75 44.0
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 3.4e-06 58.9 435 26.2
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 3.4e-06 58.9 270 30.4
Zm00001eb246740 Zea mays HOM05D006507 ORTHO05D007296 5.8e-06 58.2 358 23.5
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 7.5e-06 57.8 498 23.9
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 7.5e-06 57.8 130 36.9
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 9.9e-06 57.4 354 24.3


User provided reference genes

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