Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.4e-173 612.8 304 100.0
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.1e-159 566.6 304 93.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 9.1e-141 503.8 310 83.9
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 1.8e-117 426.4 306 74.8
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.8e-56 223.8 268 47.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 4.2e-53 212.6 236 50.0
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.9e-50 203.8 244 47.1
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.6e-49 200.7 291 42.3
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 6.2e-49 198.7 273 45.1
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 8.1e-49 198.4 309 42.4
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.8e-48 197.2 233 48.1
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 5.3e-48 195.7 242 47.5
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 5.3e-48 195.7 243 48.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.0e-46 191.4 287 40.1
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.7e-46 190.7 261 47.1
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 2.9e-46 189.9 242 47.5
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 3.8e-46 189.5 257 45.5
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 7.1e-45 185.3 232 46.1
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 2.1e-44 183.7 237 44.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 2.3e-43 180.3 240 45.8
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.5e-42 177.6 264 43.2
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.9e-42 177.2 299 38.1
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.9e-42 177.2 277 41.9
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 7.4e-42 175.3 232 45.3
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 2.1e-41 173.7 244 45.9
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.1e-41 173.7 311 36.7
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.1e-40 171.4 260 44.2
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.8e-40 170.6 264 44.3
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 2.4e-40 170.2 285 42.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.2e-39 167.9 262 42.4
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 2.6e-39 166.8 278 42.4
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.6e-39 166.8 242 43.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.5e-39 166.0 239 44.4
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 6.5e-38 162.2 234 42.3
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.9e-37 160.6 116 65.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 3.2e-37 159.8 241 43.6
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 4.2e-37 159.5 149 55.0
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 5.5e-37 159.1 234 39.7
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.0e-35 154.8 275 37.8
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 4.3e-34 149.4 198 46.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 4.1e-32 142.9 188 45.2
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 7.7e-31 138.7 233 38.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.0e-30 138.3 120 50.8
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 7.2e-29 132.1 200 42.5
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 1.5e-26 124.4 90 62.2
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 5.3e-24 115.9 278 34.2
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 5.3e-24 115.9 77 67.5
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 1.2e-23 114.8 103 58.3
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 7.7e-23 112.1 252 36.5
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 7.9e-20 102.1 81 58.0
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 3.9e-19 99.8 165 35.8
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.3e-17 94.7 138 39.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.5e-15 86.7 186 31.7
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 7.7e-15 85.5 202 32.2
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 2.2e-14 84.0 194 29.9
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.5e-13 81.3 139 30.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.9e-13 80.9 202 28.7
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 4.2e-13 79.7 177 32.8
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.1e-12 77.4 178 28.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.6e-12 76.6 150 30.0
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.6e-12 76.6 93 39.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.1e-12 75.9 146 34.2
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 8.0e-12 75.5 165 31.5
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.0e-11 75.1 164 29.9
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.4e-11 74.7 174 29.3
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.8e-11 74.3 109 35.8
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.3e-11 73.9 157 31.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.3e-11 73.9 204 27.9
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 3.0e-11 73.6 277 24.5
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.0e-11 73.6 170 29.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.0e-11 73.6 170 29.4
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.0e-11 73.2 177 28.8
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.0e-11 73.2 177 28.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 4.0e-11 73.2 109 33.9
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 6.7e-11 72.4 174 29.9
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.1e-10 71.6 137 34.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.1e-10 71.6 162 32.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.1e-10 71.6 159 30.8
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.5e-10 71.2 175 27.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-10 71.2 206 29.6
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.0e-10 70.9 113 33.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.0e-10 70.9 170 28.2
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.0e-10 70.9 239 25.9
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.0e-10 70.9 112 33.0
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.0e-10 70.9 165 27.9
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.6e-10 70.5 244 25.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.6e-10 70.5 224 26.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.6e-10 70.5 160 30.0
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.6e-10 70.5 160 30.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.3e-10 70.1 162 29.6
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.3e-10 70.1 109 34.9
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.3e-10 70.1 171 29.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 3.3e-10 70.1 137 29.9
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.3e-10 70.1 165 29.1
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 4.4e-10 69.7 234 26.5
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.4e-10 69.7 160 30.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 4.4e-10 69.7 112 36.6
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.4e-10 69.7 171 28.7
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-10 69.7 127 33.1
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.7e-10 69.3 126 32.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 5.7e-10 69.3 167 26.9
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 5.7e-10 69.3 109 35.8
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 7.5e-10 68.9 112 35.7
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.7e-10 68.6 126 33.3
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 9.7e-10 68.6 99 38.4
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 9.7e-10 68.6 137 29.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.3e-09 68.2 123 30.1
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.3e-09 68.2 169 29.6
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.3e-09 68.2 112 35.7
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.3e-09 68.2 239 25.1
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.3e-09 68.2 145 32.4
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.7e-09 67.8 111 35.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.2e-09 67.4 171 31.0
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.2e-09 67.4 252 29.4
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.2e-09 67.4 112 31.2
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.8e-09 67.0 159 28.9
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.8e-09 67.0 90 36.7
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.8e-09 67.0 90 36.7
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.7e-09 66.6 141 31.9
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 3.7e-09 66.6 91 38.5
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 3.7e-09 66.6 159 27.0
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 4.8e-09 66.2 140 29.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 4.8e-09 66.2 160 28.8
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.8e-09 66.2 167 28.7
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 6.3e-09 65.9 109 33.9
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.3e-09 65.9 160 30.6
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.3e-09 65.9 272 23.9
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 6.3e-09 65.9 149 29.5
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.2e-09 65.5 159 28.9
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 8.2e-09 65.5 125 31.2
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 8.2e-09 65.5 105 33.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 8.2e-09 65.5 149 30.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.1e-08 65.1 196 26.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.1e-08 65.1 89 37.1
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.1e-08 65.1 177 29.4
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.4e-08 64.7 152 28.9
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.4e-08 64.7 158 28.5
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.4e-08 64.7 196 27.6
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.4e-08 64.7 282 25.2
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.4e-08 64.7 119 32.8
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.4e-08 64.7 255 25.9
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.4e-08 64.7 155 27.1
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.8e-08 64.3 145 29.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.4e-08 63.9 169 27.2
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.4e-08 63.9 88 37.5
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.1e-08 63.5 212 24.5
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 3.1e-08 63.5 182 26.9
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.1e-08 63.5 142 26.8
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.1e-08 63.5 177 27.7
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.1e-08 63.2 77 36.4
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.1e-08 63.2 182 26.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 5.3e-08 62.8 197 25.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 7.0e-08 62.4 76 36.8
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 7.0e-08 62.4 124 32.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 7.0e-08 62.4 78 39.7
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 9.1e-08 62.0 197 25.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 9.1e-08 62.0 175 26.3
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 9.1e-08 62.0 177 27.1
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 2.0e-07 60.8 136 28.7
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 2.0e-07 60.8 98 36.7
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.5e-07 60.1 246 25.2
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 3.5e-07 60.1 204 26.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 4.5e-07 59.7 152 29.6
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 4.5e-07 59.7 101 31.7
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.5e-07 59.7 78 34.6
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.9e-07 59.3 98 33.7
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.9e-07 59.3 98 33.7
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.9e-07 59.3 98 33.7
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 5.9e-07 59.3 182 26.9
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 5.9e-07 59.3 166 25.9
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 5.9e-07 59.3 135 31.1
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 5.9e-07 59.3 59 44.1
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.3e-06 58.2 88 35.2
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.7e-06 57.8 165 26.7
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.2e-06 57.4 151 27.8
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 2.9e-06 57.0 240 26.2
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.9e-06 57.0 151 27.2
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.8e-06 56.6 122 29.5
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 5.0e-06 56.2 140 27.1
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 5.0e-06 56.2 161 26.1
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 6.5e-06 55.8 163 25.8
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 8.5e-06 55.5 194 26.8


User provided reference genes

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