Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 3.2e-98 361.7 177 100.0
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.2e-95 353.2 177 96.6
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 9.7e-95 350.1 177 96.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 7.2e-90 334.0 177 90.4
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.1e-81 305.8 177 78.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 3.6e-81 305.1 174 79.3
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.4e-79 298.5 176 76.1
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.7e-78 296.2 171 78.9
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 2.8e-78 295.4 168 80.4
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.7e-78 295.0 171 78.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.9e-78 294.7 177 76.3
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 6.3e-78 294.3 178 77.0
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 8.3e-78 293.9 171 77.8
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 172 77.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.4e-77 293.1 170 78.2
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 2.4e-77 292.4 171 77.2
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.4e-77 292.4 172 77.3
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 4.1e-77 291.6 175 74.3
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 4.1e-77 291.6 173 76.3
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 5.4e-77 291.2 172 76.7
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 9.2e-77 290.4 176 74.4
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 9.2e-77 290.4 169 76.9
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.6e-76 289.7 176 74.4
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 1.6e-76 289.7 169 76.9
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.0e-76 289.3 166 79.5
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 2.0e-76 289.3 171 77.2
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.5e-76 288.5 169 76.9
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 4.5e-76 288.1 169 75.7
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 4.5e-76 288.1 177 73.4
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 4.5e-76 288.1 176 74.4
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 4.5e-76 288.1 169 76.9
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.7e-75 286.2 173 75.1
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.7e-75 286.2 172 75.6
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.3e-75 285.8 166 77.1
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 2.3e-75 285.8 168 75.6
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 2.9e-75 285.4 170 75.3
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.9e-75 285.0 171 75.4
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 3.9e-75 285.0 172 73.8
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 3.9e-75 285.0 167 78.4
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 3.9e-75 285.0 167 76.6
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.9e-75 285.0 168 75.6
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.9e-75 285.0 171 76.6
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 3.9e-75 285.0 169 76.9
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 5.0e-75 284.6 166 77.7
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.6e-75 284.3 167 75.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.6e-75 284.3 167 75.4
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 8.6e-75 283.9 168 75.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 8.6e-75 283.9 168 76.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.1e-74 283.5 172 73.8
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 1.1e-74 283.5 179 74.3
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.9e-74 282.7 168 75.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.9e-74 282.7 168 75.6
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.9e-74 282.7 166 75.9
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 3.3e-74 282.0 167 75.4
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 78.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 4.3e-74 281.6 166 75.9
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.3e-74 281.6 168 74.4
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 4.3e-74 281.6 170 74.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 5.6e-74 281.2 170 74.1
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 9.5e-74 280.4 171 74.3
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 9.5e-74 280.4 169 72.8
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 9.5e-74 280.4 167 75.4
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.2e-73 280.0 171 72.5
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.2e-73 280.0 167 76.0
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.2e-73 280.0 170 73.5
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.6e-73 279.6 174 71.8
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.1e-73 279.3 172 72.7
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 2.1e-73 279.3 184 70.7
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 2.1e-73 279.3 169 72.8
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.8e-73 278.9 168 74.4
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 76.5
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 76.5
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 4.7e-73 278.1 170 71.2
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.1e-73 277.7 167 73.1
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 8.0e-73 277.3 171 73.1
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 8.0e-73 277.3 171 73.1
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.0e-72 276.9 172 71.5
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 1.4e-72 276.6 169 71.6
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.4e-72 276.6 166 77.7
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.4e-72 276.6 171 73.7
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 1.8e-72 276.2 171 72.5
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.8e-72 276.2 168 73.8
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.8e-72 276.2 170 71.2
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.8e-72 276.2 170 72.4
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.8e-72 276.2 170 72.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 3.1e-72 275.4 163 77.9
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 5.2e-72 274.6 169 71.6
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 5.2e-72 274.6 169 72.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 8.9e-72 273.9 169 72.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 8.9e-72 273.9 169 72.8
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 8.9e-72 273.9 167 71.3
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.5e-71 273.1 169 72.2
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.5e-71 273.1 170 71.8
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.6e-71 272.3 166 73.5
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 3.4e-71 271.9 167 73.1
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.4e-71 271.9 166 72.9
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 3.4e-71 271.9 170 72.4
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 5.8e-71 271.2 167 73.1
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 9.8e-71 270.4 170 71.8
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.3e-70 270.0 169 71.0
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 169 71.6
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.3e-70 270.0 169 71.6
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.3e-70 270.0 167 73.1
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.7e-70 269.6 162 75.3
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.2e-70 269.2 201 63.7
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 2.9e-70 268.9 169 71.0
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 2.9e-70 268.9 167 72.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 6.4e-70 267.7 170 71.8
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 6.4e-70 267.7 171 69.0
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 6.4e-70 267.7 164 73.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 8.3e-70 267.3 167 71.3
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.1e-69 266.9 170 69.4
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.9e-69 266.2 169 71.6
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.9e-69 266.2 152 79.6
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.2e-69 265.4 169 69.8
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.2e-68 263.5 176 67.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.0e-68 262.7 158 78.5
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 3.5e-68 261.9 171 69.0
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 1.7e-67 259.6 169 68.0
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.9e-67 258.5 169 68.6
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.6e-66 254.6 229 55.0
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 7.3e-66 254.2 174 64.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.1e-64 250.4 151 76.8
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 3.1e-64 248.8 169 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.7e-62 243.0 163 66.9
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 3.7e-62 241.9 175 64.0
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 6.0e-60 234.6 173 64.7
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.0e-59 233.8 159 66.0
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 2.3e-59 232.6 168 63.1
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 6.6e-59 231.1 165 63.6
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.5e-58 229.9 161 63.4
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 2.1e-57 226.1 168 63.1
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 6.4e-54 214.5 172 58.1
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 5.4e-53 211.5 166 54.8
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 7.8e-52 207.6 168 55.4
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.2e-47 193.7 107 80.4
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 5.4e-45 184.9 114 71.9
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 3.5e-44 182.2 109 75.2
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 6.0e-44 181.4 122 67.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 4.3e-42 175.3 171 46.8
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 2.8e-41 172.6 104 75.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.5e-39 166.8 111 68.5
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 2.0e-39 166.4 104 73.1
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 4.4e-39 165.2 167 50.9
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 5.8e-39 164.9 103 72.8
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 8.4e-38 161.0 108 67.6
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-37 159.8 109 66.1
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.9e-37 159.8 109 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 9.3e-37 157.5 102 70.6
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.0e-35 154.1 85 83.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.0e-35 152.5 169 49.1
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.6e-33 146.7 170 48.8
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 8.7e-27 124.4 73 72.6
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 4.3e-26 122.1 123 54.5
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.8e-25 119.4 157 37.6
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 4.0e-24 115.5 137 48.9
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 3.3e-18 95.9 189 28.6
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 4.3e-18 95.5 63 68.3
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.8e-16 90.1 63 58.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.0e-14 84.3 79 50.6
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 8.4e-14 81.3 60 56.7
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.1e-12 76.6 60 55.0
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.3e-11 73.2 61 57.4
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 5.7e-10 68.6 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.8e-09 65.5 62 61.3


User provided reference genes

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