Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 4.5e-86 321.2 163 100.0
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 3.4e-62 241.9 138 87.7
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 5.0e-53 211.5 140 69.3
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 1.5e-52 209.9 155 66.5
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 7.2e-52 207.6 140 67.9
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 9.4e-52 207.2 142 70.4
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 1.2e-51 206.8 154 67.5
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 6.1e-51 204.5 140 67.1
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 6.1e-51 204.5 141 69.5
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.0e-50 203.8 143 67.1
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.4e-50 203.4 140 67.9
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 1.4e-50 203.4 142 69.7
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 3.3e-49 198.7 141 66.0
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 4.4e-49 198.4 156 63.5
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 4.4e-49 198.4 154 64.3
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 7.4e-49 197.6 142 69.0
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 9.7e-49 197.2 154 64.3
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.4e-47 193.4 143 67.1
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 1.4e-47 193.4 156 61.5
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 1.8e-47 193.0 143 66.4
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 2.4e-47 192.6 154 63.6
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 3.1e-47 192.2 154 64.3
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 4.1e-47 191.8 154 64.3
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 4.1e-47 191.8 156 62.8
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 7.0e-47 191.0 155 63.2
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 1.2e-46 190.3 154 60.4
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.6e-46 189.9 154 61.7
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 1.6e-46 189.9 141 66.0
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.6e-46 189.1 154 63.6
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 4.5e-46 188.3 154 61.7
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 7.7e-46 187.6 154 61.7
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.3e-45 186.8 154 57.8
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 2.2e-45 186.0 143 65.0
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 2.2e-45 186.0 144 62.5
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 6.5e-45 184.5 140 62.1
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 1.9e-44 183.0 153 58.2
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 1.9e-44 183.0 140 62.1
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.9e-44 183.0 160 57.5
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.9e-44 183.0 154 61.0
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 2.5e-44 182.6 140 62.1
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.5e-44 182.6 140 60.7
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 2.5e-44 182.6 142 60.6
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.2e-44 182.2 140 59.3
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.2e-44 181.8 155 58.7
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 5.5e-44 181.4 155 58.7
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.2e-43 180.3 154 57.8
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.2e-43 180.3 155 58.1
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 1.6e-43 179.9 134 61.9
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 2.1e-43 179.5 159 57.2
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.6e-43 178.7 149 57.7
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.6e-43 178.7 136 63.2
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 4.7e-43 178.3 130 61.5
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.7e-43 178.3 155 57.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 6.1e-43 177.9 140 60.7
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 6.1e-43 177.9 154 57.8
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 6.1e-43 177.9 156 60.3
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.0e-42 177.2 153 57.5
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 1.0e-42 177.2 156 58.3
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.4e-42 176.8 154 54.5
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.8e-42 176.4 160 55.0
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 2.3e-42 176.0 154 59.1
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 4.0e-42 175.3 155 55.5
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 4.0e-42 175.3 162 56.2
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.0e-42 175.3 153 56.2
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 5.2e-42 174.9 155 56.1
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 5.2e-42 174.9 154 53.9
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 6.8e-42 174.5 155 56.8
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 6.8e-42 174.5 153 56.2
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.2e-41 173.7 156 56.4
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 1.2e-41 173.7 156 54.5
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 1.5e-41 173.3 160 62.5
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 2.0e-41 172.9 140 57.9
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 3.4e-41 172.2 154 55.2
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 5.7e-41 171.4 154 54.5
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 7.5e-41 171.0 156 57.1
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 7.5e-41 171.0 154 55.8
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 7.5e-41 171.0 154 55.2
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 7.5e-41 171.0 162 56.8
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 9.7e-41 170.6 144 59.7
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.3e-40 170.2 154 53.9
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 2.8e-40 169.1 141 60.3
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 3.7e-40 168.7 141 58.9
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 4.8e-40 168.3 90 93.3
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 6.3e-40 167.9 134 58.2
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 6.3e-40 167.9 154 53.9
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 8.3e-40 167.5 154 55.2
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 1.8e-39 166.4 154 52.6
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.8e-39 166.4 155 53.5
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 1.0e-37 160.6 154 53.2
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 2.2e-37 159.5 135 54.8
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 2.2e-37 159.5 141 53.2
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 5.0e-37 158.3 149 51.0
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 6.5e-37 157.9 153 52.3
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 8.5e-37 157.5 142 51.4
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.1e-36 157.1 151 52.3
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 1.5e-36 156.8 139 52.5
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.9e-36 156.4 131 54.2
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 4.2e-36 155.2 164 49.4
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 1.2e-35 153.7 156 51.9
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 4.0e-34 148.7 139 58.3
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 5.2e-34 148.3 146 48.6
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.2e-33 147.1 139 57.6
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 5.7e-33 144.8 129 58.9
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 7.5e-33 144.4 130 53.1
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 9.8e-33 144.1 116 64.7
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.7e-32 143.3 131 51.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 8.3e-32 141.0 147 47.6
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 1.4e-31 140.2 129 54.3
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.5e-30 135.6 160 47.5
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.0e-29 134.0 106 54.7
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 6.6e-29 131.3 150 47.3
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 8.6e-29 131.0 128 48.4
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 1.5e-28 130.2 145 45.5
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 2.5e-28 129.4 129 44.2
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 2.1e-27 126.3 148 43.9
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 2.8e-24 115.9 138 42.8
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.1e-23 114.0 146 39.7
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.2e-22 110.5 138 39.9
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 3.9e-21 105.5 76 63.2
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 5.6e-20 101.7 105 48.6
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 9.5e-20 100.9 116 44.8
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.0e-18 97.4 144 39.6
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.0e-18 97.4 90 55.6
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 8.6e-13 77.8 65 53.8
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 1.1e-12 77.4 135 31.1
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 9.5e-12 74.3 64 51.6
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 2.8e-11 72.8 87 41.4
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 4.7e-11 72.0 90 47.8
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 8.0e-11 71.2 76 44.7
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 5.8e-09 65.1 41 63.4
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 5.4e-07 58.5 47 53.2


User provided reference genes

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